Factsheet for AT1G34310.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G34390.1	Thale cress	nucleus	91.4	90.64
AT1G35520.1	Thale cress	nucleus	90.22	90.22
AT1G34410.1	Thale cress	nucleus	89.71	87.79
AT1G35240.1	Thale cress	nucleus	86.85	86.99
AT1G35540.1	Thale cress	nucleus	86.68	84.96
AT1G34170.3	Thale cress	nucleus	49.58	53.85
CDY53570	Canola	nucleus	44.01	52.1
CDY67714	Canola	nucleus	46.04	51.41
CDY21993	Canola	nucleus	47.22	51.38
Bra027944.1-P	Field mustard	nucleus	47.55	51.37
CDY41720	Canola	nucleus	47.55	51.27
Bra034234.1-P	Field mustard	nucleus	46.71	51.2
CDY49005	Canola	nucleus	47.89	50.99
CDY48583	Canola	nucleus	46.88	50.82
CDX94777	Canola	nucleus	47.55	50.63
CDY36940	Canola	nucleus	46.88	50.18
Bra018124.1-P	Field mustard	nucleus	46.88	50.09
Bra017362.1-P	Field mustard	nucleus	45.19	49.63
CDY55738	Canola	nucleus	44.86	49.26
CDY54111	Canola	nucleus	46.88	49.03
CDX94748	Canola	endoplasmic reticulum, vacuole	30.52	48.92
CDY24168	Canola	nucleus	46.21	48.67
CDY69758	Canola	nucleus	33.39	47.6
AT4G23980.1	Thale cress	nucleus	47.22	43.89
KRH49135	Soybean	nucleus	46.54	41.57
VIT_02s0025g01740.t01	Wine grape	nucleus	46.88	40.76
KRH00001	Soybean	nucleus	45.19	40.36
KRH65922	Soybean	nucleus	46.37	39.8
CDX94484	Canola	nucleus	41.99	39.78
GSMUA_AchrUn_...	Banana	nucleus	42.33	39.53
AT3G61830.1	Thale cress	nucleus	39.97	39.37
KRH75716	Soybean	nucleus	45.7	39.16
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	40.98	39.07
GSMUA_Achr10P...	Banana	nucleus	42.66	37.93
GSMUA_Achr2P19760_001	Banana	nucleus	42.66	37.87
GSMUA_Achr7P24330_001	Banana	nucleus	42.16	37.54
Solyc08g008380.2.1	Tomato	nucleus	42.83	37.19
Solyc08g082630.2.1	Tomato	nucleus	40.13	36.96
PGSC0003DMT400031965	Potato	nucleus	40.81	36.95
CDX94528	Canola	nucleus	40.47	35.87
AT1G59750.1	Thale cress	nucleus	39.46	35.19
Os01t0236300-01	Rice	nucleus	39.63	33.62
EES02172	Sorghum	nucleus	38.45	33.14
CDY24162	Canola	nucleus	35.75	32.62
Zm00001d039267_P005	Maize	nucleus	36.76	31.5
TraesCS3B01G190100.1	Wheat	nucleus	39.12	30.61
TraesCS3A01G159200.1	Wheat	nucleus	39.12	30.57
TraesCS3D01G166700.1	Wheat	nucleus	38.95	30.47
AT5G62000.1	Thale cress	nucleus	42.83	29.57
HORVU3Hr1G032230.6	Barley	nucleus, plastid	38.95	28.88
AT5G60450.1	Thale cress	nucleus	34.57	26.02
AT5G37020.1	Thale cress	nucleus	33.56	24.54
AT1G30330.3	Thale cress	nucleus	35.24	22.35
AT1G19850.1	Thale cress	nucleus	33.22	21.84
AT1G19220.1	Thale cress	nucleus	35.41	19.34
AT5G20730.1	Thale cress	nucleus	33.39	17.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:840331	ProteinID:AAD39615.1
EMBL:AB493494	ProteinID:AEE31695.1	Symbol:ARF12	ArrayExpress:AT1G34310	EnsemblPlantsGene:AT1G34310	RefSeq:AT1G34310
TAIR:AT1G34310	RefSeq:AT1G34310-TAIR-G	EnsemblPlants:AT1G34310.1	TAIR:AT1G34310.1	InterPro:AUX/IAA_dom	EMBL:AY669792
Unigene:At.51185	InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:C0SUZ1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
RefSeq:NP_174691.2	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF1
UniProt:Q9XID4	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000034F446	:

Description

ARF12Auxin response factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID4]

Coordinates

chr1:-:12508548..12511520

Molecular Weight (calculated)

67221.4 Da

IEP (calculated)

6.699

GRAVY (calculated)

-0.396

Length

593 amino acids

Sequence
(BLAST)

001: MESGNVVNAQ PELSGIIDGS KSYVYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVETS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSAHGG FFVPKKHAIE CLPSLDMSQP LPAQELLAID LHGNQWRFNH NYRGTPQRHL LTTGWNAFTT
201: SKKLVAGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVVA SAKHAFDNQC MFTVVYKPRS SKFIVSYDKF LDAVNNKFNV GSRFTMRLEG
301: DDFSERRCFG TIIGVSDFSP HWKCSEWRSL EVQWDEFTSF PGPKKVSPWD IEHLMPAINV PRSFLLKNKR LREVNEIGSS SSHLLPPILT QGQENEQLSV
401: ASPMNISLRY RDATEDAMNP SKLLMSYPVQ PMPKLNYNNQ MVTEMEENIT TKTGTNFRLF GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT
501: EIQNKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF CNMVKKIFIQ KRR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.