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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX80545
CDX82361
CDX83741
CDX86939
CDX87072
CDX87230
CDX88204
CDX89832
CDX92140
CDX92437
CDX92973
CDX94484
CDX94528
CDX94748
CDX94777
CDX95843
CDY00245
CDY01393
CDY03502
CDY10068
CDY10349
CDY10694
CDY10978
CDY15493
CDY16560
CDY16798
CDY18214
CDY19790
CDY21111
CDY21993
CDY24162
CDY24168
CDY27291
CDY27511
CDY29392
CDY30017
CDY30781
CDY32537
CDY33603
CDY36940
CDY39348
CDY41720
CDY41894
CDY45069
CDY46058
CDY46895
CDY47607
CDY48005
CDY48583
CDY49005
CDY50434
CDY50750
CDY53305
CDY53570
CDY54111
CDY55738
CDY61164
CDY62586
CDY63072
CDY63910
CDY65065
CDY67247
CDY67714
CDY69758
CDY71609

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34310.1 CDX83741 AT1G19850.1 22096563
AT1G34310.1 CDY01393 AT1G19850.1 22096563
AT1G34310.1 CDY29392 AT1G19850.1 22096563
AT1G34310.1 CDY39348 AT1G19850.1 22096563
AT1G34310.1 CDY61164 AT1G19850.1 22096563
AT1G34310.1 CDY62586 AT1G19850.1 22096563
AT1G34310.1 CDX94484 AT1G34310.1 22096563
AT1G34310.1 CDX94528 AT1G34310.1 22096563
AT1G34310.1 CDX94748 AT1G34310.1 22096563
AT1G34310.1 CDX94777 AT1G34310.1 22096563
AT1G34310.1 CDY21993 AT1G34310.1 22096563
AT1G34310.1 CDY24162 AT1G34310.1 22096563
AT1G34310.1 CDY24168 AT1G34310.1 22096563
AT1G34310.1 CDY36940 AT1G34310.1 22096563
AT1G34310.1 CDY41720 AT1G34310.1 22096563
AT1G34310.1 CDY48583 AT1G34310.1 22096563
AT1G34310.1 CDY49005 AT1G34310.1 22096563
AT1G34310.1 CDY53570 AT1G34310.1 22096563
AT1G34310.1 CDY54111 AT1G34310.1 22096563
AT1G34310.1 CDY55738 AT1G34310.1 22096563
AT1G34310.1 CDY67714 AT1G34310.1 22096563
AT1G34310.1 CDY69758 AT1G34310.1 22096563
AT1G34310.1 CDY27291 AT1G59750.1 22096563
AT1G34310.1 CDY33603 AT1G59750.1 22096563
AT1G34310.1 CDY65065 AT1G59750.1 22096563
AT1G34310.1 CDX82361 AT3G17600.1 21734647
AT1G34310.1 CDX92140 AT3G17600.1 21734647
AT1G34310.1 CDX95843 AT3G17600.1 21734647
AT1G34310.1 CDY46058 AT3G17600.1 21734647
AT1G34310.1 CDY46895 AT3G17600.1 21734647
AT1G34310.1 CDY71609 AT3G17600.1 21734647
AT1G34310.1 CDY03502 AT4G23980.1 22096563
AT1G34310.1 CDY10978 AT4G23980.1 22096563
AT1G34310.1 CDY47607 AT4G23980.1 22096563
AT1G34310.1 CDY50434 AT4G23980.1 22096563
AT1G34310.1 CDX86939 AT5G62000.1 21734647
AT1G34310.1 CDX87230 AT5G62000.1 21734647
AT1G34310.1 CDY00245 AT5G62000.1 21734647
AT1G34310.1 CDY16798 AT5G62000.1 21734647
AT1G34310.1 CDY67247 AT5G62000.1 21734647
AT1G34390.1 CDX94484 AT1G34310.1 21734647
AT1G34390.1 CDX94528 AT1G34310.1 21734647
AT1G34390.1 CDX94748 AT1G34310.1 21734647
AT1G34390.1 CDX94777 AT1G34310.1 21734647
AT1G34390.1 CDY21993 AT1G34310.1 21734647
AT1G34390.1 CDY24162 AT1G34310.1 21734647
AT1G34390.1 CDY24168 AT1G34310.1 21734647
AT1G34390.1 CDY36940 AT1G34310.1 21734647
AT1G34390.1 CDY41720 AT1G34310.1 21734647
AT1G34390.1 CDY48583 AT1G34310.1 21734647
AT1G34390.1 CDY49005 AT1G34310.1 21734647
AT1G34390.1 CDY53570 AT1G34310.1 21734647
AT1G34390.1 CDY54111 AT1G34310.1 21734647
AT1G34390.1 CDY55738 AT1G34310.1 21734647
AT1G34390.1 CDY67714 AT1G34310.1 21734647
AT1G34390.1 CDY69758 AT1G34310.1 21734647
AT1G34390.1 CDY27511 AT2G46990.1 21734647
AT1G34390.1 CDY48005 AT2G46990.1 21734647
AT1G34390.1 CDY21111 AT3G04730.1 21734647
AT1G34390.1 CDY30017 AT3G04730.1 21734647
AT1G34390.1 CDY41894 AT3G04730.1 21734647
AT1G34390.1 CDY50750 AT3G04730.1 21734647
AT1G34390.1 CDX92973 AT3G23050.1 21734647
AT1G34390.1 CDY10349 AT3G23050.1 21734647
AT1G34390.1 CDY10694 AT3G23050.1 21734647
AT1G34390.1 CDY30781 AT3G23050.1 21734647
AT1G34390.1 CDY63910 AT3G23050.1 21734647
AT1G34390.1 CDX80545 AT5G25890.1 21734647
AT1G34390.1 CDX87072 AT5G25890.1 21734647
AT1G34390.1 CDX88204 AT5G25890.1 21734647
AT1G34390.1 CDY19790 AT5G25890.1 21734647
AT1G35240.1 CDX89832 AT1G04250.1 21734647
AT1G35240.1 CDY10068 AT1G04250.1 21734647
AT1G35240.1 CDY15493 AT1G04250.1 21734647
AT1G35240.1 CDY18214 AT1G04250.1 21734647
AT1G35240.1 CDY32537 AT1G04250.1 21734647
AT1G35240.1 CDY63072 AT1G04250.1 21734647
AT1G35240.1 CDY53305 AT1G15580.1 21734647
AT1G35240.1 CDX92437 AT5G20730.1 21734647
AT1G35240.1 CDY16560 AT5G20730.1 21734647
AT1G35240.1 CDY45069 AT5G20730.1 21734647
AT1G35540.1 CDY53305 AT1G15580.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra017362.1-P Field mustard nucleus 98.89 98.89
CDY41720 Canola nucleus 84.44 82.91
CDY53570 Canola nucleus 76.11 82.04
CDY36940 Canola nucleus 73.52 71.66
CDY49005 Canola nucleus 73.7 71.45
CDX94777 Canola nucleus 73.33 71.1
CDY24168 Canola nucleus 71.67 68.74
CDY54111 Canola nucleus 71.67 68.25
CDX94484 Canola nucleus 76.11 65.66
CDX94528 Canola nucleus 71.67 57.85
CDX94748 Canola endoplasmic reticulum, vacuole 38.7 56.49
CDY67714 Canola nucleus 53.89 54.8
CDY21993 Canola nucleus 54.81 54.31
CDY48583 Canola nucleus 54.63 53.93
CDY69758 Canola nucleus 39.44 51.2
CDY24162 Canola nucleus 58.52 48.62
AT1G34390.1 Thale cress nucleus 50.37 45.48
AT1G35240.1 Thale cress nucleus 49.63 45.27
AT1G34410.1 Thale cress nucleus 50.74 45.21
AT1G35520.1 Thale cress nucleus 49.26 44.86
AT1G34310.1 Thale cress nucleus 49.26 44.86
AT1G35540.1 Thale cress nucleus 50.0 44.63
AT1G34170.3 Thale cress nucleus 44.07 43.59
CDY47607 Canola nucleus 39.63 35.43
CDY10978 Canola nucleus 39.44 34.08
CDY03502 Canola nucleus 37.59 33.83
CDY50434 Canola nucleus 39.07 33.76
CDX80025 Canola nucleus 36.48 33.73
VIT_02s0025g01740.t01 Wine grape nucleus 41.48 32.84
CDX95705 Canola nucleus 32.78 32.48
KRH49135 Soybean nucleus 38.52 31.33
KRH00001 Soybean nucleus 37.96 30.87
KRH65922 Soybean nucleus 39.44 30.82
KRH75716 Soybean nucleus 39.44 30.78
Solyc08g008380.2.1 Tomato nucleus 38.52 30.45
GSMUA_AchrUn_... Banana nucleus 35.74 30.39
PGSC0003DMT400031965 Potato nucleus 36.67 30.23
CDY27291 Canola nucleus 34.44 30.05
GSMUA_Achr10P... Banana nucleus 35.74 28.94
GSMUA_Achr2P19760_001 Banana nucleus 35.56 28.74
Solyc08g082630.2.1 Tomato nucleus 34.07 28.57
CDY33603 Canola nucleus 34.44 28.14
CDY65065 Canola nucleus 34.26 27.99
GSMUA_Achr7P24330_001 Banana nucleus 34.44 27.93
Os01t0236300-01 Rice nucleus 33.33 25.75
EES02172 Sorghum nucleus 31.85 25.0
Zm00001d039267_P005 Maize nucleus 31.3 24.42
CDX86939 Canola nucleus 37.78 24.0
CDY00245 Canola nucleus 37.78 23.97
CDX87230 Canola nucleus 36.67 23.91
TraesCS3D01G166700.1 Wheat nucleus 32.96 23.48
TraesCS3B01G190100.1 Wheat nucleus 32.96 23.48
TraesCS3A01G159200.1 Wheat nucleus 32.96 23.45
CDY67247 Canola nucleus 36.48 23.15
CDY16798 Canola nucleus 36.67 22.58
HORVU3Hr1G032230.6 Barley nucleus, plastid 33.33 22.5
CDY39274 Canola nucleus 29.44 20.41
CDY07460 Canola nucleus 29.44 20.36
CDY31545 Canola nucleus 28.52 20.34
CDX80168 Canola nucleus 28.52 20.29
CDY53537 Canola nucleus 28.52 18.92
CDX74594 Canola nucleus 28.52 18.8
CDY12048 Canola nucleus 29.44 18.77
CDY02285 Canola nucleus 30.19 18.67
CDX90245 Canola nucleus 29.26 18.54
CDY09598 Canola nucleus 29.81 18.51
CDX83741 Canola nucleus 27.22 17.38
CDY62586 Canola nucleus 27.04 17.26
CDY61164 Canola nucleus 27.04 16.96
CDY01393 Canola nucleus 26.85 16.76
CDY29392 Canola nucleus 27.04 16.67
CDY39348 Canola nucleus 26.67 16.38
CDX83778 Canola nucleus 28.7 15.2
CDX96672 Canola nucleus 28.52 15.1
CDY26690 Canola nucleus 29.07 14.97
CDY41030 Canola nucleus 28.89 14.74
CDX92437 Canola nucleus 26.85 13.94
CDY16560 Canola nucleus 26.85 13.92
CDY45069 Canola nucleus 27.04 13.12
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90GO:A0A078J1B3UniProt:A0A078J1B3
InterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlants:CDY55738ProteinID:CDY55738ProteinID:CDY55738.1InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009725GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00017303001InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300InterPro:PB1_domPFAM:PF06507
PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF1SUPFAM:SSF101936SUPFAM:SSF54277UniParc:UPI0004EE0DD4
SEG:seg:::::
Description
BnaAnng13910DBnaAnng13910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1B3]
Coordinates
chrLK033425:+:50211..53273
Molecular Weight (calculated)
61372.2 Da
IEP (calculated)
6.627
GRAVY (calculated)
-0.449
Length
540 amino acids
Sequence
(BLAST)
001: MASDQIMHVQ PEVLDIDETN NYLNGQLLKL CAGPLFDTPK VGEKLVTSIN DELCQLKPIF DISSKICCTV FSINLKVENN TNDIYAEVAL LPDTSDVEIP
101: IPKNKNNIQN INYFTKVLSA SDTCKTGGFV LYKRHAMECL PLLDMSQLTP SQEIIAKDIH GHKWSFKHTL RGENGESRVG ISRAAHQERN IPTSSISKQS
201: MHHGVVATAL NTIKNKCMFV VFYKPRSSQF LVNFDKFVDR VNNKFSIGSK FSMKFEGKDL NETRYNGTIV GVGDFSTHWK DSEWRSLKVQ WDGTATIPRP
301: DKVSPWEIEM LTQSSNISKS DYLKNKRQID VYEFGSKMWS PTLSKGQESG QPSIQSSMRY SFSTMYNEQM AQAMKETSTT TATTSCRLFG VDLVNPATTK
401: DPVEPIDSNK KLKISKIFED EKIDHVQARS HTKVHMEGVI ERTVDLTIFD GYNQLIDELE RLFDIKGELH MHNKWKMFFI YDDGDMMILG DDPWTKFCYM
501: AKEIFICSKK DVKIGIADNR FSEGDPTLTT TILPPDVNNN
Best Arabidopsis Sequence Match ( AT1G34390.1 )
(BLAST)
001: MESGNIVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKIYYFP QGNIELVEAS TREELNELKP ICDLPSKLQC RVIAIQLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSGGFF VPKKHAIECL PPLDMSQPLP TQELLATDLH GNQWRFNHNY RGTPQRHLLT TGWNAFTTSK
201: KLVAGDVIVF VRGETGELRV GIRRAGHQQG NIPSSIISIE SMRHGVIASA KHAFDNQCMF IVVYKPRSSQ FIVSYDKFLD AVNNKFNVGS RFTMRFEGDD
301: FSERRYFGTI IGVSDFSPHW KCSEWRNLEV QWDEFASFSR PNKVSPWEIE HLMPALNVPR PSLLKNKRLR EVNEIGSSSS HLLPPILTQG QEIGQLSVAS
401: PMNISLTYRD TTEDVMNPSR LLMSYPVQPM PKLNYNNQMV TQIEENITTK TGTNFRLFGV SLVTPSVIKD PIEEIGSEIS KLTEGKKFGQ SQTLRSPTEI
501: QSKQFSSTRT CTKVQMQGVT IERAVDLSVL NGYDQLILEL EELFDLKGQL QTRNQWEIAF TDSDDDKMLV GDDPWPEFCN MVKKILIFKR GGQKLEVQ
Arabidopsis Description
ARF22Auxin response factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.