Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 96.55 | 96.55 |
| Bra009867.1-P | Field mustard | cytosol | 95.98 | 94.89 |
| AT5G25890.1 | Thale cress | nucleus | 87.93 | 87.43 |
| CDX87072 | Canola | cytosol | 83.33 | 82.86 |
| CDY19790 | Canola | cytosol | 82.18 | 73.33 |
| CDY46895 | Canola | cytosol | 14.94 | 36.11 |
| CDY33844 | Canola | nucleus | 51.15 | 35.18 |
| CDY22876 | Canola | nucleus | 50.57 | 34.78 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 44.83 | 34.06 |
| Os01t0190300-01 | Rice | nucleus | 45.98 | 33.61 |
| CDX87863 | Canola | nucleus | 48.85 | 33.46 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 43.1 | 33.33 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 43.1 | 33.04 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 43.1 | 32.89 |
| CDY46538 | Canola | nucleus | 50.57 | 32.59 |
| CDY53439 | Canola | nucleus | 50.0 | 31.87 |
| CDY43104 | Canola | nucleus | 48.85 | 31.84 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 41.95 | 31.74 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 41.38 | 31.58 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 41.38 | 31.3 |
| CDY34957 | Canola | nucleus | 48.28 | 31.23 |
| CDY64626 | Canola | cytosol | 47.7 | 30.86 |
| CDY71609 | Canola | nucleus, plastid | 27.59 | 30.57 |
| CDY51701 | Canola | nucleus | 35.06 | 30.35 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 42.53 | 29.96 |
| CDX75884 | Canola | cytosol | 46.55 | 29.89 |
| CDX92077 | Canola | nucleus | 48.28 | 29.47 |
| CDX82399 | Canola | nucleus | 45.98 | 29.41 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 41.38 | 29.39 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 39.66 | 29.36 |
| EES17832 | Sorghum | nucleus | 40.8 | 29.34 |
| CDX82361 | Canola | cytosol, plastid | 26.44 | 29.3 |
| Os02t0228900-01 | Rice | nucleus | 50.0 | 29.0 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 41.95 | 28.97 |
| Zm00001d016277_P002 | Maize | nucleus | 48.28 | 28.09 |
| OQU84670 | Sorghum | nucleus | 47.13 | 28.08 |
| CDX92140 | Canola | nucleus, plastid | 25.29 | 27.85 |
| CDX95843 | Canola | plastid | 24.71 | 27.74 |
| CDX67874 | Canola | plastid | 27.01 | 27.17 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 38.51 | 27.13 |
| CDY48005 | Canola | cytosol, plastid | 27.01 | 27.01 |
| CDY27511 | Canola | cytosol, plastid | 27.01 | 27.01 |
| CDY58757 | Canola | plastid | 26.44 | 26.74 |
| CDY25089 | Canola | plastid | 26.44 | 26.59 |
| CDY59182 | Canola | nucleus | 33.33 | 25.78 |
| CDY53196 | Canola | nucleus | 33.33 | 25.55 |
| CDY19477 | Canola | nucleus | 34.48 | 25.53 |
| CDY35203 | Canola | nucleus | 35.63 | 25.51 |
| CDY17158 | Canola | nucleus | 34.48 | 25.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.83 | 25.32 |
| CDY38374 | Canola | nucleus | 34.48 | 25.21 |
| CDY18243 | Canola | nucleus | 33.33 | 25.11 |
| CDX89814 | Canola | nucleus | 33.91 | 25.11 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 42.53 | 24.92 |
| CDY11402 | Canola | plastid | 25.29 | 24.86 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 41.38 | 24.49 |
| Os01t0741900-01 | Rice | nucleus | 47.13 | 24.48 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 41.38 | 24.41 |
| CDX79522 | Canola | nucleus | 34.48 | 24.39 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 50.57 | 23.98 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 45.98 | 23.88 |
| CDX84693 | Canola | nucleus | 32.76 | 23.55 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 45.98 | 23.46 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 45.98 | 23.32 |
| Os05t0523300-01 | Rice | nucleus | 43.68 | 23.24 |
| KXG33336 | Sorghum | nucleus | 46.55 | 22.19 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 45.4 | 22.13 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 44.83 | 22.1 |
| Zm00001d038784_P001 | Maize | nucleus | 44.83 | 22.1 |
| OQU86163 | Sorghum | golgi, plastid | 45.4 | 22.07 |
| KXG22376 | Sorghum | nucleus | 43.68 | 22.03 |
| CDY46058 | Canola | plastid | 19.54 | 20.36 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 29.89 | 19.19 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 29.89 | 19.19 |
| CDX68829 | Canola | nucleus | 23.56 | 17.98 |
| CDX75231 | Canola | nucleus | 23.56 | 17.75 |
| CDY13478 | Canola | nucleus | 24.14 | 17.28 |
| CDX72351 | Canola | nucleus | 24.14 | 17.0 |
| CDX92888 | Canola | nucleus | 35.06 | 15.06 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078CUR4 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX80545 |
| ProteinID:CDX80545 | ProteinID:CDX80545.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00133654001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI0004EAE858 | : | : |
Description
BnaC07g28990D
Coordinates
chrLK031821:+:1225602..1226927
Molecular Weight (calculated)
20270.2 Da
IEP (calculated)
9.306
GRAVY (calculated)
-0.767
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEKRLELR LAPPCHQLTP NRNIHGSKQR SLTKETSFVS YNRVEAAPVV GWPPVRSSRR YLTSQIKEEM KKIESDEERE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFKKDSS DLNRQYTLVY EDTEGDKVLV GDVPWEMFVS TVKRLHVLKT SHVSMFSPRK NCKE
101: YNNYQQLSHA VDQLFKKDSS DLNRQYTLVY EDTEGDKVLV GDVPWEMFVS TVKRLHVLKT SHVSMFSPRK NCKE
001: MEEEKRLELR LAPPCHQFTS NNNINGSKQK SSTKETSFLS NNRVEVAPVV GWPPVRSSRR NLTAQLKEEM KKKESDEEKE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
Arabidopsis Description
IAA28Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.