CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000604.1-P	Field mustard	cytosol, plastid	99.51	99.51
CDY21439	Canola	cytosol	96.87	97.35
AT5G49980.1	Thale cress	nucleus	91.27	89.5
CDY34286	Canola	cytosol	77.59	77.34
CDY03450	Canola	cytosol	77.43	77.05
VIT_18s0001g07120.t01	Wine grape	cytosol	71.0	72.56
PGSC0003DMT400005419	Potato	cytosol	68.2	67.54
KRH72427	Soybean	cytosol	69.69	67.14
Solyc04g074980.2.1	Tomato	cytosol	68.53	66.77
KRH16819	Soybean	cytosol	68.86	65.31
KRH62206	Soybean	cytosol	62.6	65.18
Os03t0187500-01	Rice	cytosol	26.85	64.68
KRH52925	Soybean	cytosol	62.11	64.22
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	35.26	62.39
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	33.94	61.68
GSMUA_Achr3P06710_001	Banana	cytosol	57.83	61.26
GSMUA_Achr5P05520_001	Banana	cytosol	58.81	60.82
GSMUA_Achr7P11780_001	Banana	cytosol	57.33	58.98
TraesCS7D01G177500.1	Wheat	cytosol, plastid	59.97	57.87
TraesCS7A01G176200.1	Wheat	cytosol	59.47	57.85
TraesCS7B01G081200.1	Wheat	cytosol	59.47	57.76
Os02t0759700-01	Rice	cytosol	60.3	57.46
HORVU6Hr1G077570.1	Barley	mitochondrion	58.65	56.69
TraesCS6B01G345800.1	Wheat	plastid	59.64	56.12
TraesCS4D01G301800.1	Wheat	cytosol, nucleus, peroxisome	56.34	56.07
TraesCS6A01G315300.1	Wheat	plastid	59.64	55.95
TraesCS6D01G294600.1	Wheat	plastid	59.64	55.86
TraesCS4A01G001800.1	Wheat	cytosol	55.85	55.76
EES05842	Sorghum	plastid	60.63	55.59
Zm00001d052188_P001	Maize	plastid	60.3	54.95
Zm00001d018126_P001	Maize	plastid	60.13	54.89
Zm00001d027975_P001	Maize	cytosol	53.21	54.01
EER92735	Sorghum	cytosol	53.38	53.82
Zm00001d048233_P001	Maize	cytosol	52.39	53.18
CDY34211	Canola	cytosol	49.26	52.0
CDY28523	Canola	cytosol	49.26	52.0
CDY16034	Canola	cytosol	48.27	50.6
CDY26594	Canola	cytosol	48.11	50.52
CDX71968	Canola	cytosol	47.94	50.35
HORVU4Hr1G078120.4	Barley	cytosol, plastid	55.52	49.41
CDY68868	Canola	cytosol	43.66	49.07
CDY53998	Canola	cytosol	47.12	48.97
CDY21068	Canola	cytosol	47.45	48.81
CDY31282	Canola	cytosol	47.12	48.72
CDY53774	Canola	cytosol	46.13	47.78
CDX76680	Canola	cytosol	46.62	47.56
CDY11468	Canola	cytosol	46.46	47.4
CDX90899	Canola	cytosol	45.63	47.27
CDY21947	Canola	plastid, vacuole	45.96	44.57
CDX67912	Canola	endoplasmic reticulum, golgi	47.12	44.34
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	46.29	43.98
CDX89163	Canola	cytosol	42.67	41.37
CDX97301	Canola	cytosol	5.44	35.87
CDY24941	Canola	cytosol	29.49	30.34
CDX74819	Canola	cytosol	29.49	29.83
CDY20501	Canola	cytosol	29.49	29.73
CDY07041	Canola	cytosol	28.17	28.89
CDX93223	Canola	cytosol	27.68	28.43
CDX93225	Canola	cytosol	27.18	27.78
CDY07040	Canola	cytosol	27.51	27.51
CDY60996	Canola	endoplasmic reticulum, golgi	29.16	25.18

Protein Annotations

EnsemblPlants:CDX83172	EnsemblPlantsGene:GSBRNA2T00138702001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944
PANTHER:PTHR43944:SF8	ProteinID:CDX83172	ProteinID:CDX83172.1	SEG:seg	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EEAE66	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:

Description

BnaA03g23340D

Coordinates

chrLK031832:+:215300..217779

Molecular Weight (calculated)

68028.1 Da

IEP (calculated)

5.350

GRAVY (calculated)

-0.105

Length

607 amino acids

Sequence
(BLAST)

001: MPEDDEDQSP PSDLRSQPPC SPNKSRNCIS SSSSQTFPDH VLENVLENVL QFLDSRCDRN AASLVCKLWW KVEGLTRSEV FIGNCYALSP ARLTQRFKRV
101: RSLLLKGKPR FADFNLMPPD WGANFAPWVS TMAKAYPWLE KVDLKRMFVT DDDLALLAES FPGFKELVLV CCEGFGTSGI AVVANKCRKL KVLDLIESEV
201: TDDEVDWVSC FPEDVTCLES LAFDCVEAPI NFKALEGLVG RSPSLRKLRL NRFVSLEEVR RLLLLGAPQL TSLGTGSFSR GDQSDEQEPP DYAAAFRACK
301: SVVCLSGFRE LMPEYLPAIL PVCANLTSLN FSYANISPDM FKPIIHSCHK LQIFWALDSI CDEGLQAVAA TCKELRELRI FPFDPREDSE GPVSELGLQA
401: ISEGCRKLES LLYFCQRMTN AALIAMSHNC PELTVFRLCI MGRHRPDHVT GKAMDEGFGA IVKNCKKLTR LAVSGLLTDQ AFRYMGEYGK LIRTLSVAFA
501: GDSDMALRHV LEGCPRLQKL EIRDSPFGDV ALRSGMHRYY NMRFVWMSAC SLSMGCCKDV ARAMPNLVVE VIGSDDDDEN REFVETLYMY RSLDGPRKDA
601: PQFVTIL

Best Arabidopsis Sequence Match ( AT5G49980.1 )
(BLAST)

001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL

Arabidopsis Description

AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.