Factsheet for HORVU4Hr1G078120.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24390.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
AT4G24390.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
AT4G24390.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
AT4G24390.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
AT4G24390.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
AT4G24390.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
AT4G24390.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
AT4G24390.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
AT4G24390.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT4G24390.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT4G24390.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT4G24390.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT4G24390.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT4G24390.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT4G24390.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT4G24390.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT4G24390.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT4G24390.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT4G24390.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT4G24390.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT4G24390.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT4G24390.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT4G24390.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT4G24390.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G001800.1	Wheat	cytosol	86.22	96.71
TraesCS4D01G301800.1	Wheat	cytosol, nucleus, peroxisome	86.22	96.39
Os03t0187500-01	Rice	cytosol	32.55	88.1
EER92735	Sorghum	cytosol	69.5	78.74
Zm00001d027975_P001	Maize	cytosol	68.92	78.6
Zm00001d048233_P001	Maize	cytosol	68.62	78.26
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	29.77	59.18
VIT_18s0001g07120.t01	Wine grape	cytosol	51.03	58.59
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	28.45	58.08
GSMUA_Achr7P11780_001	Banana	cytosol	49.71	57.46
KRH52925	Soybean	cytosol	48.68	56.56
CDY21439	Canola	cytosol	49.71	56.13
KRH62206	Soybean	cytosol	47.95	56.09
PGSC0003DMT400005419	Potato	cytosol	50.29	55.95
Bra000604.1-P	Field mustard	cytosol, plastid	49.71	55.85
Solyc04g074980.2.1	Tomato	cytosol	50.88	55.7
CDX83172	Canola	cytosol, plastid	49.41	55.52
KRH72427	Soybean	cytosol	51.03	55.24
HORVU6Hr1G077570.1	Barley	mitochondrion	50.73	55.1
AT5G49980.1	Thale cress	nucleus	49.71	54.77
CDY03450	Canola	cytosol	48.83	54.59
Bra013798.1-P	Field mustard	cytosol	48.39	54.37
CDY34286	Canola	cytosol	48.53	54.35
KRH16819	Soybean	cytosol	50.29	53.59
AT4G24390.1	Thale cress	cytosol, plastid	48.53	53.13
HORVU6Hr1G021040.2	Barley	extracellular	10.56	51.43
HORVU5Hr1G075620.2	Barley	cytosol	39.0	46.83
HORVU2Hr1G070800.1	Barley	cytosol	38.12	45.3
HORVU1Hr1G021550.4	Barley	cytosol	36.95	39.25
HORVU3Hr1G085210.2	Barley	cytosol	27.13	31.14
HORVU1Hr1G073230.1	Barley	cytosol	26.1	30.12
HORVU4Hr1G060950.3	Barley	cytosol	25.81	30.03

Protein Annotations

EnsemblPlants:HORVU4Hr1G078120.4	EnsemblPlantsGene:HORVU4Hr1G078120	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR43944	PANTHER:PTHR43944:SF4	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI000B47149A	UniProt:A0A287PRM7	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:

Description

No Description!

Coordinates

chrchr4H:-:606484737..606487431

Molecular Weight (calculated)

74641.7 Da

IEP (calculated)

7.088

GRAVY (calculated)

-0.139

Length

682 amino acids

Sequence
(BLAST)

001: HPSIHPARSE RASPAPAPLP PSRFLVLLCS AVEHCRLPGQ PVRRSTSTPP HTHPPHPHXP PPHHPTPPSC PRARAAMSEE DEDQAAPPKR PRAASPPPPP
101: PPDQVLDNVL ETVLQFLAAP GDRGAASLVC RSWHRAESAT RASVAVRNIL AASPARAARR FPNAHHILLK GRPRFADFNL LPPGWAASAF RPWAAALAAA
201: AFPALRSLSL KRITVTDDDL DLLARSLPPS FRELSLLLCD GFSSRGLASL ASHCRGLRVL DVVDCELNEE EDDEVSDWVA AFPRGHTDLE SLSFECFTPQ
301: VPFAALEALV ARSPRLRRLR VNQHVSLGQL RRLMTLTPRL THLGTGSFRP GDGADDEGLD FGQMLTAFAS AGRANSLVSL SGFRDLAPEY LPTIATVAAN
401: LTTMDLSFAP VNPDQVLLFI GQCRSLETLW VLDSVRDEGL QAVAMCCKKL QVLRVLPLDA HEDADELVSE VGLTAISEGC RDLRSILYFC QRMTNVAVVT
501: MSQNCPELKV FRLCIMGRHR PDHVTGEPMD EGFGAIVRNC SRLTRLSTSG HLTDRAFEYI GKYGSSLRTL SVAFAGDSDL ALQHILQGCS KLEKLEIRDC
601: PFGDAGLLSG MHHFYNMRFV WMSGCSLTLE GCKAVARQLP RMVVELINSQ PENEKTDGVD ILYMYRSLEG PREDVPPFVR IL

Best Arabidopsis Sequence Match ( AT5G49980.1 )
(BLAST)

001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL

Arabidopsis Description

AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.