Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- mitochondrion 1
- nucleus 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G098530.4 | |
| HORVU5Hr1G014300.4 | |
| HORVU5Hr1G093580.2 | |
| HORVU5Hr1G094220.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G075620.2 | Barley | cytosol | 95.0 | 23.42 |
| TraesCS5A01G281100.1 | Wheat | cytosol | 91.43 | 22.5 |
| TraesCS5D01G288000.1 | Wheat | cytosol | 91.43 | 22.5 |
| TraesCS5B01G280100.1 | Wheat | cytosol | 89.29 | 21.85 |
| HORVU4Hr1G080360.1 | Barley | cytosol, peroxisome, plastid | 47.86 | 19.53 |
| GSMUA_Achr6P20580_001 | Banana | cytosol | 67.86 | 19.0 |
| Os11t0515500-01 | Rice | cytosol | 75.71 | 18.66 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.0 | 18.39 |
| HORVU4Hr1G015730.1 | Barley | cytosol, peroxisome, plastid | 43.57 | 18.26 |
| GSMUA_Achr6P16510_001 | Banana | cytosol | 69.29 | 18.2 |
| GSMUA_Achr9P01140_001 | Banana | cytosol | 68.57 | 18.01 |
| GSMUA_Achr6P08000_001 | Banana | cytosol | 68.57 | 18.01 |
| EES09791 | Sorghum | cytosol | 74.29 | 17.99 |
| Zm00001d007357_P005 | Maize | cytosol | 73.57 | 17.98 |
| GSMUA_Achr10P... | Banana | cytosol | 65.71 | 17.26 |
| VIT_14s0068g01330.t01 | Wine grape | cytosol | 65.0 | 15.91 |
| KRG94665 | Soybean | cytosol | 64.29 | 15.73 |
| KRH06858 | Soybean | cytosol | 63.57 | 15.56 |
| AT1G12820.1 | Thale cress | cytosol | 62.86 | 15.25 |
| KRH70053 | Soybean | cytosol | 62.14 | 15.18 |
| AT3G26810.1 | Thale cress | cytosol | 61.43 | 14.96 |
| Bra032954.1-P | Field mustard | cytosol | 61.43 | 14.96 |
| CDY34211 | Canola | cytosol | 61.43 | 14.96 |
| CDY31282 | Canola | cytosol | 62.14 | 14.82 |
| CDY28523 | Canola | cytosol | 60.71 | 14.78 |
| Bra016754.1-P | Field mustard | cytosol | 62.14 | 14.75 |
| CDY21068 | Canola | cytosol | 62.14 | 14.75 |
| CDX71968 | Canola | cytosol | 60.71 | 14.71 |
| Bra026953.1-P | Field mustard | cytosol | 60.71 | 14.71 |
| CDY16034 | Canola | cytosol | 60.71 | 14.68 |
| KRH08397 | Soybean | cytosol | 60.0 | 14.66 |
| HORVU2Hr1G070800.1 | Barley | cytosol | 60.0 | 14.63 |
| CDY26594 | Canola | cytosol | 59.29 | 14.36 |
| HORVU1Hr1G021550.4 | Barley | cytosol | 54.29 | 11.84 |
| HORVU6Hr1G077570.1 | Barley | mitochondrion | 50.71 | 11.31 |
| HORVU4Hr1G078120.4 | Barley | cytosol, plastid | 51.43 | 10.56 |
| HORVU3Hr1G085210.2 | Barley | cytosol | 31.43 | 7.41 |
| HORVU1Hr1G073230.1 | Barley | cytosol | 27.14 | 6.43 |
| HORVU4Hr1G060950.3 | Barley | cytosol | 26.43 | 6.31 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G021040.2 | EnsemblPlantsGene:HORVU6Hr1G021040 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR43944 |
| PANTHER:PTHR43944:SF5 | SUPFAM:SSF52047 | UniParc:UPI000296653D | UniProt:M0W1M9 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr6H:-:61368296..61372366
Molecular Weight (calculated)
15082.3 Da
IEP (calculated)
5.129
GRAVY (calculated)
0.151
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSMSGLLT DSVFLYIGMY AERLETLSVA FAGDSDDGMI YVLNGCKNLR KLEMRNCSFG DTALLAGMHR YEAMGSIWMS SCDITLGGCR SLAATMPNLN
101: VEVVSQADGG ACDAKKVEKL YIYRTLAGPR GDAPGFVSAL
101: VEVVSQADGG ACDAKKVEKL YIYRTLAGPR GDAPGFVSAL
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.