Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026953.1-P | Field mustard | cytosol | 89.25 | 89.1 |
| CDX71968 | Canola | cytosol | 89.08 | 88.93 |
| CDY16034 | Canola | cytosol | 89.08 | 88.77 |
| CDY26594 | Canola | cytosol | 88.56 | 88.41 |
| Bra016754.1-P | Field mustard | cytosol | 88.39 | 86.44 |
| AT3G26810.1 | Thale cress | cytosol | 86.14 | 86.43 |
| CDY21068 | Canola | cytosol | 88.04 | 86.1 |
| CDY31282 | Canola | cytosol | 87.52 | 86.03 |
| VIT_14s0068g01330.t01 | Wine grape | cytosol | 76.08 | 76.75 |
| KRG94665 | Soybean | cytosol | 75.39 | 76.05 |
| KRH06858 | Soybean | cytosol | 74.7 | 75.35 |
| KRH70053 | Soybean | cytosol | 73.31 | 73.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.64 | 69.98 |
| KRH08397 | Soybean | cytosol | 68.63 | 69.11 |
| GSMUA_Achr9P01140_001 | Banana | cytosol | 63.78 | 69.04 |
| GSMUA_Achr6P16510_001 | Banana | cytosol | 63.6 | 68.86 |
| GSMUA_Achr10P... | Banana | cytosol | 63.43 | 68.67 |
| GSMUA_Achr6P08000_001 | Banana | cytosol | 63.26 | 68.48 |
| GSMUA_Achr6P20580_001 | Banana | cytosol | 56.15 | 64.8 |
| Zm00001d003911_P003 | Maize | cytosol | 64.3 | 64.52 |
| Os04t0395600-01 | Rice | cytosol | 63.95 | 64.17 |
| TraesCS2A01G286200.1 | Wheat | cytosol | 63.78 | 64.11 |
| TraesCS2D01G285000.1 | Wheat | cytosol | 63.78 | 64.11 |
| HORVU2Hr1G070800.1 | Barley | cytosol | 63.78 | 64.11 |
| TraesCS2B01G302900.1 | Wheat | cytosol | 63.6 | 63.94 |
| Zm00001d025268_P001 | Maize | cytosol | 63.08 | 63.53 |
| KXG26136 | Sorghum | cytosol | 64.99 | 63.24 |
| HORVU6Hr1G021040.2 | Barley | extracellular | 15.25 | 62.86 |
| TraesCS5D01G288000.1 | Wheat | cytosol | 58.58 | 59.4 |
| TraesCS5B01G280100.1 | Wheat | cytosol | 58.75 | 59.27 |
| EES09791 | Sorghum | cytosol | 59.27 | 59.17 |
| TraesCS5A01G281100.1 | Wheat | cytosol | 58.23 | 59.05 |
| HORVU5Hr1G075620.2 | Barley | cytosol | 58.06 | 58.98 |
| Os11t0515500-01 | Rice | cytosol | 57.54 | 58.45 |
| Zm00001d007357_P005 | Maize | cytosol | 57.19 | 57.59 |
| AT3G62980.1 | Thale cress | cytosol | 58.93 | 57.24 |
| AT4G03190.1 | Thale cress | cytosol, plastid | 54.94 | 54.19 |
| AT5G49980.1 | Thale cress | nucleus | 51.47 | 47.98 |
| AT4G24390.1 | Thale cress | cytosol, plastid | 50.43 | 46.71 |
| AT2G39940.1 | Thale cress | cytosol | 31.89 | 31.08 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.80.10.10 | EntrezGene:837838 | UniProt:A0A178WFK2 |
| ProteinID:AAF78487.1 | ProteinID:AEE28934.1 | Symbol:AFB3 | EMBL:AK227280 | ArrayExpress:AT1G12820 | EnsemblPlantsGene:AT1G12820 |
| RefSeq:AT1G12820 | TAIR:AT1G12820 | RefSeq:AT1G12820-TAIR-G | EnsemblPlants:AT1G12820.1 | TAIR:AT1G12820.1 | EMBL:AY099541 |
| Unigene:At.71229 | EMBL:BT002118 | InterPro:F-box_dom | GO:GO:0000003 | GO:GO:0000822 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0010011 | GO:GO:0010152 | GO:GO:0016567 | GO:GO:0019005 | GO:GO:0019538 |
| GO:GO:0048443 | GO:GO:0048527 | GO:GO:0071249 | GO:GO:0080022 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | RefSeq:NP_563915.1 | ProteinID:OAP17189.1 | PO:PO:0000013 | PO:PO:0000025 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0006203 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0009062 |
| PO:PO:0009066 | PO:PO:0009067 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF9 | UniProt:Q9LPW7 | SMART:SM00256 |
| SUPFAM:SSF52047 | UniParc:UPI00000AC383 | SEG:seg | : | : | : |
Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
Coordinates
chr1:-:4368760..4371298
Molecular Weight (calculated)
64909.8 Da
IEP (calculated)
7.222
GRAVY (calculated)
-0.069
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.