Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDX90932
CDX92973
CDY10349
CDY10694
CDY13521
CDY18013
CDY21896
CDY22060
CDY30781
CDY39073
CDY63910

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12820.1 CDX68112 AT1G75950.1 15992545
AT1G12820.1 CDX73212 AT1G75950.1 15992545
AT1G12820.1 CDX80590 AT1G75950.1 15992545
AT1G12820.1 CDX85931 AT1G75950.1 15992545
AT1G12820.1 CDX87650 AT1G75950.1 15992545
AT1G12820.1 CDY13521 AT1G75950.1 15992545
AT1G12820.1 CDY39073 AT1G75950.1 15992545
AT1G12820.1 CDX92973 AT3G23050.1 15992545
AT1G12820.1 CDY10349 AT3G23050.1 15992545
AT1G12820.1 CDY10694 AT3G23050.1 15992545
AT1G12820.1 CDY30781 AT3G23050.1 15992545
AT1G12820.1 CDY63910 AT3G23050.1 15992545
AT1G12820.1 CDX90932 AT4G02570.1 15992545
AT1G12820.1 CDY18013 AT4G02570.1 15992545
AT1G12820.1 CDY21896 AT4G02570.1 15992545
AT1G12820.1 CDY22060 AT4G02570.1 15992545
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016754.1-P Field mustard cytosol 96.08 95.59
CDY21068 Canola cytosol 95.91 95.42
CDY16034 Canola cytosol 88.93 90.16
CDX71968 Canola cytosol 88.76 90.14
CDY26594 Canola cytosol 88.59 89.97
AT1G12820.1 Thale cress cytosol 86.03 87.52
CDY34211 Canola cytosol 79.05 80.7
CDY28523 Canola cytosol 79.05 80.7
VIT_14s0068g01330.t01 Wine grape cytosol 72.23 74.13
KRG94665 Soybean cytosol 71.55 73.43
KRH06858 Soybean cytosol 71.21 73.08
KRH70053 Soybean cytosol 69.68 71.38
GSMUA_AchrUn_... Banana cytosol 62.35 68.67
GSMUA_Achr6P08000_001 Banana cytosol 62.35 68.67
GSMUA_Achr9P01140_001 Banana cytosol 62.18 68.48
GSMUA_Achr6P16510_001 Banana cytosol 60.82 66.98
KRH08397 Soybean cytosol 65.25 66.84
GSMUA_Achr10P... Banana cytosol 60.65 66.79
Zm00001d003911_P003 Maize cytosol 63.71 65.04
Os04t0395600-01 Rice cytosol 63.03 64.35
HORVU2Hr1G070800.1 Barley cytosol 62.86 64.29
TraesCS2A01G286200.1 Wheat cytosol 62.69 64.11
TraesCS2D01G285000.1 Wheat cytosol 62.69 64.11
TraesCS2B01G302900.1 Wheat cytosol 62.52 63.94
GSMUA_Achr6P20580_001 Banana cytosol 54.17 63.6
KXG26136 Sorghum cytosol 64.05 63.41
Zm00001d025268_P001 Maize cytosol 61.5 63.0
HORVU6Hr1G021040.2 Barley extracellular 14.82 62.14
CDY68868 Canola cytosol 55.2 60.0
EES09791 Sorghum cytosol 58.77 59.69
Os11t0515500-01 Rice cytosol 57.58 59.51
TraesCS5A01G281100.1 Wheat cytosol 57.24 59.05
CDY53998 Canola cytosol 58.6 58.9
TraesCS5D01G288000.1 Wheat cytosol 57.07 58.88
TraesCS5B01G280100.1 Wheat cytosol 57.24 58.74
HORVU5Hr1G075620.2 Barley cytosol 56.39 58.27
CDX76680 Canola cytosol 58.6 57.82
CDY11468 Canola cytosol 58.43 57.65
Zm00001d007357_P005 Maize cytosol 55.71 57.07
CDY53774 Canola cytosol 55.03 55.12
CDX90899 Canola cytosol 54.34 54.44
CDX67912 Canola endoplasmic reticulum, golgi 58.26 53.02
CDY21947 Canola plastid, vacuole 54.51 51.12
CDX89163 Canola cytosol 53.49 50.16
CDY22108 Canola endoplasmic reticulum, golgi, plastid, vacuole 54.51 50.08
CDY21439 Canola cytosol 48.72 47.35
CDX83172 Canola cytosol, plastid 48.72 47.12
CDY03450 Canola cytosol 48.38 46.56
CDY34286 Canola cytosol 47.7 45.98
CDX97301 Canola cytosol 6.47 41.3
CDY20501 Canola cytosol 31.35 30.56
CDY24941 Canola cytosol 30.49 30.34
CDX74819 Canola cytosol 31.01 30.33
CDX93223 Canola cytosol 29.98 29.78
CDX93225 Canola cytosol 29.98 29.63
CDY07041 Canola cytosol 29.81 29.56
CDY07040 Canola cytosol 29.64 28.67
CDY60996 Canola endoplasmic reticulum, golgi 30.49 25.46
Protein Annotations
Gene3D:1.20.1280.50MapMan:11.2.2.1.1MapMan:19.2.2.8.1.4.6Gene3D:3.80.10.10UniProt:A0A078H197EnsemblPlants:CDY31282
ProteinID:CDY31282ProteinID:CDY31282.1ncoils:CoilInterPro:F-box_domGO:GO:0003674GO:GO:0005488
GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00047444001InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR43944PANTHER:PTHR43944:SF9SMART:SM00256SMART:SM00367SUPFAM:SSF52047UniParc:UPI0004EE1C25
SEG:seg:::::
Description
BnaC08g15770DBnaC08g15770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H197]
Coordinates
chrLK032269:-:478469..481106
Molecular Weight (calculated)
66110.0 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.072
Length
587 amino acids
Sequence
(BLAST)
001: MNKALKFPMN YFPEEVIEHI FDFIASHRDR NSISLVSKSW HKIERYSRHQ VFIGNCYAIS PERLIRRFPC LRSLTLKGKP HFADFNLVPH EWGGFLHPWI
101: DALSKARVGL EELRLKRMVV SDESLELLSR SFVSFKSLVL VSCDGFTTDG LASIAANCRN LRELDLQENE IDDHRGQWLN CFPDSCTTLV SLNFACLKGE
201: INLSALERLV ARSTNLKSLK VNRAVPLDGL TRLMSCAPQL VDLGVGCYEN EAEPESFASL MAAIKKCILL RSLSGFSEVA SVCLTAFYPI CENLTSLNLS
301: YAAEIQGNHL IEFVQFCKRL QLLWILDSIG DKGLEVVASS CKELQELRVF PSDPHDEEDN NTAVTEVGLV AISAGCPKLH SILYFCKQMT NEALITVAKN
401: CPNFIRFRLC ILEPNKPDHI TSQSLDEGFG AIVQSCKGLR RLSVSGLLTD KVFLYIGMYA EQLEMLSIAF AGDTDKGMLY VLNGCKKLRK LEIRDSPFGN
501: AALLADVGKY ETMRSLWMSS CEVTLGGCKR LARNAPWLNV EIINENENEN GRMERNEEDE REKVDRLYLY RTVVGTRKDA PPCVTIL
Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.