CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

plastid 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80545
CDX80590
CDX85931
CDX87072
CDX87650
CDX88204
CDX90932
CDX92973
CDY10349
CDY10694
CDY13521
CDY18013
CDY19790
CDY21896
CDY22060
CDY30781
CDY39073
CDY63910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03190.1	CDX68112	AT1G75950.1	12008900
AT4G03190.1	CDX73212	AT1G75950.1	12008900
AT4G03190.1	CDX80590	AT1G75950.1	12008900
AT4G03190.1	CDX85931	AT1G75950.1	12008900
AT4G03190.1	CDX87650	AT1G75950.1	12008900
AT4G03190.1	CDY13521	AT1G75950.1	12008900
AT4G03190.1	CDY39073	AT1G75950.1	12008900
AT4G03190.1	CDX68112	AT1G75950.1	15992545
AT4G03190.1	CDX73212	AT1G75950.1	15992545
AT4G03190.1	CDX80590	AT1G75950.1	15992545
AT4G03190.1	CDX85931	AT1G75950.1	15992545
AT4G03190.1	CDX87650	AT1G75950.1	15992545
AT4G03190.1	CDY13521	AT1G75950.1	15992545
AT4G03190.1	CDY39073	AT1G75950.1	15992545
AT4G03190.1	CDX92973	AT3G23050.1	15992545
AT4G03190.1	CDY10349	AT3G23050.1	15992545
AT4G03190.1	CDY10694	AT3G23050.1	15992545
AT4G03190.1	CDY30781	AT3G23050.1	15992545
AT4G03190.1	CDY63910	AT3G23050.1	15992545
AT4G03190.1	CDX90932	AT4G02570.1	15992545
AT4G03190.1	CDY18013	AT4G02570.1	15992545
AT4G03190.1	CDY21896	AT4G02570.1	15992545
AT4G03190.1	CDY22060	AT4G02570.1	15992545
AT4G03190.1	CDX80545	AT5G25890.1	21734647
AT4G03190.1	CDX87072	AT5G25890.1	21734647
AT4G03190.1	CDX88204	AT5G25890.1	21734647
AT4G03190.1	CDY19790	AT5G25890.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	96.01	94.05
CDY53774	Canola	cytosol	79.87	85.32
CDX90899	Canola	cytosol	79.23	84.64
AT4G03190.1	Thale cress	cytosol, plastid	78.11	83.59
CDY53998	Canola	cytosol	63.1	67.64
CDY11468	Canola	cytosol	64.06	67.39
CDX76680	Canola	cytosol	63.74	67.06
CDY68868	Canola	cytosol	57.83	67.04
CDX97301	Canola	cytosol	9.11	61.96
CDX67912	Canola	endoplasmic reticulum, golgi	63.74	61.86
GSMUA_Achr5P26930_001	Banana	cytosol	45.69	61.64
GSMUA_Achr3P23850_001	Banana	cytosol	56.23	60.48
KXG21312	Sorghum	plastid	54.95	58.21
Os05t0150500-00	Rice	plastid	54.31	57.92
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	54.47	57.89
Zm00001d010863_P001	Maize	plastid	54.47	57.8
TraesCS1A01G091300.1	Wheat	cytosol	54.63	57.77
CDY34211	Canola	cytosol	53.04	57.74
CDY28523	Canola	cytosol	53.04	57.74
CDX89163	Canola	cytosol	57.03	57.03
TraesCS1D01G099900.1	Wheat	cytosol	54.47	56.83
CDX71968	Canola	cytosol	51.44	55.71
CDY16034	Canola	cytosol	51.44	55.61
CDY26594	Canola	cytosol	51.28	55.54
CDY21068	Canola	cytosol	51.44	54.58
CDY31282	Canola	cytosol	51.12	54.51
HORVU1Hr1G021550.4	Barley	cytosol	53.83	52.49
CDY21439	Canola	cytosol	44.57	46.19
CDX83172	Canola	cytosol, plastid	44.57	45.96
CDY03450	Canola	cytosol	42.97	44.1
CDY34286	Canola	cytosol	42.17	43.35
CDY24941	Canola	cytosol	27.96	29.66
CDY20501	Canola	cytosol	27.8	28.9
CDX74819	Canola	cytosol	27.64	28.83
CDX93225	Canola	cytosol	27.16	28.62
CDX93223	Canola	cytosol	26.84	28.43
CDY07041	Canola	cytosol	26.68	28.21
CDY07040	Canola	cytosol	27.16	28.01
CDY60996	Canola	endoplasmic reticulum, golgi	27.8	24.75

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A078GAB1	EnsemblPlants:CDY21947
ProteinID:CDY21947	ProteinID:CDY21947.1	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00018276001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646
PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0004EE1A36
SEG:seg	:	:	:	:	:

Description

BnaC09g00530DBnaC09g00530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAB1]

Coordinates

chrLK032126:-:260038..262968

Molecular Weight (calculated)

71040.6 Da

IEP (calculated)

8.005

GRAVY (calculated)

-0.060

Length

626 amino acids

Sequence
(BLAST)

001: MGASSTLLMV YIYQNLQFFR LISNQISKPL FPLSLSPSLV LMDRRFPFKV LEHIFSFVDS NEDRNSVSLV CKSWFETERR TRKRVFVGNC YAVSPLKVAR
101: RFPKMRSLTL KGKPHFADYN LVPDGWGGYA WPWIEAMAAR RPFLEEIRLK RMVVTDECLE KIAASFRDFK TLVLTSCEGF STDGIAAIAS TCRKLRDLEL
201: RECIVDDLGG DWLSYFPETS TSLVSIDFSC LDSEVKLSDL ERLLSRSPNL KSLKLNRSVT LDVLESLLRR APQLVELGTG SFSDELDPEE IAKLTKALSE
301: LKQLKSLSGL WDLLPEYIPL LYSLCPRLTS LNLSYATVQM PDLIDLLSRC SKLQKLWVMD LIEDKGLKTV ALCCKELREL RVFPSGADLD ETDVTLTEQG
401: LVSVSEGCPK LESVLYFCVQ FTNAALVSIA KNRPNFRCFR LCVMEPFAPD YRTQQPLDEG FKAIVERCKD LRRLSVSGLL TDKAFEYIGV HAKKLRMLSI
501: AFAGDSDLML HHLLSGCQSL KKLEIRDCPF GDTALLENAA KLETMRSLWM SSCFVSFGAC KQLSQKMPRL NVEVIDEHPP KTRPDSSPVE RIYIYRTVAG
601: PRLDTPEFVW TIHKSPEVGV SRLSIR

Best Arabidopsis Sequence Match ( AT4G03190.1 )
(BLAST)

001: MGLRFPPKVL EHILSFIDSN EDRNSVSLVC KSWFETERKT RKRVFVGNCY AVSPAAVTRR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAAKS
101: SSLEEIRMKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGIAAIAAT CRNLRVLELR ECIVEDLGGD WLSYFPESST SLVSLDFSCL DSEVKISDLE
201: RLVSRSPNLK SLKLNPAVTL DGLVSLLRCA PQLTELGTGS FAAQLKPEAF SKLSEAFSNC KQLQSLSGLW DVLPEYLPAL YSVCPGLTSL NLSYATVRMP
301: DLVELLRRCS KLQKLWVMDL IEDKGLEAVA SYCKELRELR VFPSEPDLDA TNIPLTEQGL VFVSKGCRKL ESVLYFCVQF TNAALFTIAR KRPNLKCFRL
401: CVIEPFAPDY KTNEPLDKGF KAIAEGCRDL RRLSVSGLLS DKAFKYIGKH AKKVRMLSIA FAGDSDLMLH HLLSGCESLK KLEIRDCPFG DTALLEHAAK
501: LETMRSLWMS SCFVSFGACK LLSQKMPRLN VEVIDEHPPE SRPESSPVER IYIYRTVAGP RMDTPEFVWT IHKNPENGVS HLAIK

Arabidopsis Description

GRH1GRR1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR12]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.