CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX68156
CDX69936
CDX70553
CDX71533
CDX73127
CDX73212
CDX74819
CDX78346
CDX78568
CDX78656
CDX80590
CDX81116
CDX84385
CDX85608
CDX85865
CDX85931
CDX87650
CDX90932
CDX91076
CDX92171
CDX93223
CDX93225
CDX95810
CDY01192
CDY02426
CDY07040
CDY07041
CDY12369
CDY12734
CDY13521
CDY16736
CDY18013
CDY20501
CDY21553
CDY21896
CDY22060
CDY22374
CDY24941
CDY26433
CDY26697
CDY27125
CDY37269
CDY39073
CDY41023
CDY41500
CDY45408
CDY46022
CDY48127
CDY60996
CDY61016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39940.1	CDY26697	AT1G19180.1	17637677
AT2G39940.1	CDY41023	AT1G19180.1	17637677
AT2G39940.1	CDY26697	AT1G19180.1	18547396
AT2G39940.1	CDY41023	AT1G19180.1	18547396
AT2G39940.1	CDX68156	AT1G74950.1	18547396
AT2G39940.1	CDX73127	AT1G74950.1	18547396
AT2G39940.1	CDX85865	AT1G74950.1	18547396
AT2G39940.1	CDY37269	AT1G74950.1	18547396
AT2G39940.1	CDY45408	AT1G74950.1	18547396
AT2G39940.1	CDY46022	AT1G74950.1	18547396
AT2G39940.1	CDX68112	AT1G75950.1	12172031
AT2G39940.1	CDX73212	AT1G75950.1	12172031
AT2G39940.1	CDX80590	AT1G75950.1	12172031
AT2G39940.1	CDX85931	AT1G75950.1	12172031
AT2G39940.1	CDX87650	AT1G75950.1	12172031
AT2G39940.1	CDY13521	AT1G75950.1	12172031
AT2G39940.1	CDY39073	AT1G75950.1	12172031
AT2G39940.1	CDX68112	AT1G75950.1	12445118
AT2G39940.1	CDX73212	AT1G75950.1	12445118
AT2G39940.1	CDX80590	AT1G75950.1	12445118
AT2G39940.1	CDX85931	AT1G75950.1	12445118
AT2G39940.1	CDX87650	AT1G75950.1	12445118
AT2G39940.1	CDY13521	AT1G75950.1	12445118
AT2G39940.1	CDY39073	AT1G75950.1	12445118
AT2G39940.1	CDX68112	AT1G75950.1	14749489
AT2G39940.1	CDX73212	AT1G75950.1	14749489
AT2G39940.1	CDX80590	AT1G75950.1	14749489
AT2G39940.1	CDX85931	AT1G75950.1	14749489
AT2G39940.1	CDX87650	AT1G75950.1	14749489
AT2G39940.1	CDY13521	AT1G75950.1	14749489
AT2G39940.1	CDY39073	AT1G75950.1	14749489
AT2G39940.1	CDX74819	AT2G39940.1	12724535
AT2G39940.1	CDX93223	AT2G39940.1	12724535
AT2G39940.1	CDX93225	AT2G39940.1	12724535
AT2G39940.1	CDY07040	AT2G39940.1	12724535
AT2G39940.1	CDY07041	AT2G39940.1	12724535
AT2G39940.1	CDY20501	AT2G39940.1	12724535
AT2G39940.1	CDY24941	AT2G39940.1	12724535
AT2G39940.1	CDY60996	AT2G39940.1	12724535
AT2G39940.1	CDX92171	AT3G17860.1	17637675
AT2G39940.1	CDX95810	AT3G17860.1	17637675
AT2G39940.1	CDX92171	AT3G17860.1	18547396
AT2G39940.1	CDX95810	AT3G17860.1	18547396
AT2G39940.1	CDX92171	AT3G17860.1	19309455
AT2G39940.1	CDX95810	AT3G17860.1	19309455
AT2G39940.1	CDX90932	AT4G02570.1	12172031
AT2G39940.1	CDY18013	AT4G02570.1	12172031
AT2G39940.1	CDY21896	AT4G02570.1	12172031
AT2G39940.1	CDY22060	AT4G02570.1	12172031
AT2G39940.1	CDX90932	AT4G02570.1	12445118
AT2G39940.1	CDY18013	AT4G02570.1	12445118
AT2G39940.1	CDY21896	AT4G02570.1	12445118
AT2G39940.1	CDY22060	AT4G02570.1	12445118
AT2G39940.1	CDX90932	AT4G02570.1	12724535
AT2G39940.1	CDY18013	AT4G02570.1	12724535
AT2G39940.1	CDY21896	AT4G02570.1	12724535
AT2G39940.1	CDY22060	AT4G02570.1	12724535
AT2G39940.1	CDY01192	AT4G14110.1	12724535
AT2G39940.1	CDY12369	AT4G14110.1	12724535
AT2G39940.1	CDY12734	AT4G14110.1	12724535
AT2G39940.1	CDY27125	AT4G14110.1	12724535
AT2G39940.1	CDX69936	AT5G08590.1	12172031
AT2G39940.1	CDX78346	AT5G08590.1	12172031
AT2G39940.1	CDX81116	AT5G08590.1	12172031
AT2G39940.1	CDY21553	AT5G08590.1	12172031
AT2G39940.1	CDX69936	AT5G08590.1	14749489
AT2G39940.1	CDX78346	AT5G08590.1	14749489
AT2G39940.1	CDX81116	AT5G08590.1	14749489
AT2G39940.1	CDY21553	AT5G08590.1	14749489
AT2G39940.1	CDX70553	AT5G14250.1	12724535
AT2G39940.1	CDX78568	AT5G14250.1	12724535
AT2G39940.1	CDX78656	AT5G14250.1	12724535
AT2G39940.1	CDX85608	AT5G14250.1	12724535
AT2G39940.1	CDX91076	AT5G14250.1	12724535
AT2G39940.1	CDY26433	AT5G14250.1	12724535
AT2G39940.1	CDX71533	AT5G42970.1	12724535
AT2G39940.1	CDY02426	AT5G42970.1	12724535
AT2G39940.1	CDY22374	AT5G42970.1	12724535
AT2G39940.1	CDY61016	AT5G42970.1	12724535
AT2G39940.1	CDX84385	AT5G63110.1	12445118
AT2G39940.1	CDY16736	AT5G63110.1	12445118
AT2G39940.1	CDY41500	AT5G63110.1	12445118
AT2G39940.1	CDY48127	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005000.1-P	Field mustard	cytosol	98.67	98.51
CDX74819	Canola	cytosol	98.17	98.5
CDY24941	Canola	cytosol	89.53	91.36
AT2G39940.1	Thale cress	cytosol	88.37	89.86
CDX93223	Canola	cytosol	80.73	82.23
CDY07041	Canola	cytosol	79.9	81.25
CDX93225	Canola	cytosol	79.24	80.3
CDY07040	Canola	cytosol	78.24	77.59
CDY60996	Canola	endoplasmic reticulum, golgi	89.87	76.96
KRH14993	Soybean	cytosol	65.78	69.72
KRH73146	Soybean	cytosol	67.44	69.52
KRH31107	Soybean	cytosol	67.61	68.98
VIT_13s0019g03380.t01	Wine grape	cytosol	68.44	68.9
KRG97777	Soybean	cytosol	67.28	68.64
Solyc05g052620.2.1	Tomato	cytosol	66.94	66.83
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	61.3	63.29
GSMUA_Achr5P28930_001	Banana	cytosol	58.14	62.5
GSMUA_Achr9P03690_001	Banana	cytosol	61.3	61.19
HORVU4Hr1G060950.3	Barley	cytosol	54.82	56.31
TraesCS4B01G213500.1	Wheat	cytosol	54.49	55.97
TraesCS4D01G214200.1	Wheat	cytosol	54.32	55.8
TraesCS4A01G091200.1	Wheat	cytosol	54.32	55.8
Os05t0449500-01	Rice	cytosol	55.32	55.78
Zm00001d042833_P001	Maize	cytosol	55.32	55.69
EES18318	Sorghum	cytosol	55.32	55.59
TraesCS3A01G367500.1	Wheat	cytosol	51.33	55.48
Os01t0853400-01	Rice	cytosol	54.82	55.46
GSMUA_Achr8P02350_001	Banana	cytosol	15.78	55.23
Zm00001d012338_P001	Maize	cytosol	54.65	55.2
Zm00001d038273_P001	Maize	cytosol	54.82	55.09
TraesCS3B01G399200.1	Wheat	cytosol	54.32	55.05
HORVU3Hr1G085210.2	Barley	cytosol	54.32	55.05
HORVU1Hr1G073230.1	Barley	cytosol	53.99	54.99
TraesCS3D01G360400.2	Wheat	cytosol	54.32	54.96
Zm00001d010082_P001	Maize	cytosol	54.65	54.92
TraesCS1B01G288100.1	Wheat	cytosol	53.65	54.56
TraesCS1D01G278400.1	Wheat	cytosol	53.65	54.56
EES01769	Sorghum	cytosol	53.99	54.53
Os03t0265500-01	Rice	plasma membrane	53.32	54.5
TraesCS1A01G279100.1	Wheat	cytosol	53.49	54.39
EER95129	Sorghum	cytosol	52.82	53.81
Zm00001d028543_P001	Maize	cytosol	52.33	53.3
Zm00001d047848_P001	Maize	cytosol	51.99	52.96
CDY68868	Canola	cytosol	29.57	32.96
CDY53998	Canola	cytosol	31.06	32.02
CDY34211	Canola	cytosol	30.4	31.83
CDY26594	Canola	cytosol	30.4	31.66
CDX71968	Canola	cytosol	30.4	31.66
CDY28523	Canola	cytosol	30.23	31.65
CDY16034	Canola	cytosol	30.4	31.61
CDY21068	Canola	cytosol	30.73	31.36
CDY31282	Canola	cytosol	30.56	31.35
CDY11468	Canola	cytosol	30.4	30.76
CDY53774	Canola	cytosol	29.9	30.72
CDX76680	Canola	cytosol	30.23	30.59
CDX90899	Canola	cytosol	29.24	30.03
CDY21439	Canola	cytosol	29.9	29.8
CDY34286	Canola	cytosol	30.07	29.72
CDY03450	Canola	cytosol	29.9	29.51
CDX83172	Canola	cytosol, plastid	29.73	29.49
CDX67912	Canola	endoplasmic reticulum, golgi	30.9	28.84
CDY21947	Canola	plastid, vacuole	28.9	27.8
CDX89163	Canola	cytosol	28.74	27.64
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	29.07	27.39
CDX97301	Canola	cytosol	3.82	25.0

Protein Annotations

EnsemblPlants:CDY20501	EnsemblPlantsGene:GSBRNA2T00012605001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR43944	PANTHER:PTHR43944:SF6	ProteinID:CDY20501	ProteinID:CDY20501.1	SUPFAM:SSF52047	UniParc:UPI0004EF1F46
UniProt:A0A078G4Z6	MapMan:11.7.2.1.1	:	:	:	:

Description

BnaC04g05430DBnaC04g05430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4Z6]

Coordinates

chrLK032108:-:549066..552249

Molecular Weight (calculated)

68782.8 Da

IEP (calculated)

6.662

GRAVY (calculated)

-0.192

Length

602 amino acids

Sequence
(BLAST)

001: MEDPDIKKCR LTPKMIIATP PLLISVDDVI EQVMPYITDS NDRDSASLVC RRWFKIDSET REHVTMALCY TSTPDRLSRR FPNLRSLKLK GKPRAAMFNL
101: IPENWGGFVT PWVNEIAASL RRLKSVHFRR MIVSDLDLDV LAKSRLDELE ALKLDKCSGF STDGLLSIVR HCRRIKTLLM EESSFLEKDG QWLHELALHN
201: TSLEVLNFYM TEFNKINPKD LETIARNCRL SLISVKVGDL EILELVGFFK AATNLEEFCG GSLNEDIGIP EKYMNLTFPP KLCRLGLSYL GANEMPILFP
301: FAAQIRKLDL LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQH CKKLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI
401: TNESLESIGT HLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDVGLSYIGR YSPNVRWMLL GYVGETDEGL MEFSRGCPSL
501: QKLEMRGCCF SERAIAAAVM RLPSLRYLWV QGYRASTRGQ DLRLMSRPYW NIELIPSRRI PEVNQLGEVR EMEHPAHILA YYSLAGERTD CPPTVKVLKE
601: ET

Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)

001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI

Arabidopsis Description

COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.