Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022254.1-P | Field mustard | nucleus | 91.37 | 91.64 |
| CDX95810 | Canola | nucleus | 85.42 | 85.67 |
| AT3G17860.1 | Thale cress | nucleus | 78.87 | 75.28 |
| CDY18478 | Canola | nucleus | 76.49 | 72.8 |
| CDY72405 | Canola | plastid | 31.85 | 69.03 |
| CDX95570 | Canola | plastid | 30.65 | 68.67 |
| CDX68335 | Canola | mitochondrion, nucleus, plastid | 20.54 | 32.55 |
| CDY23487 | Canola | cytosol, mitochondrion, nucleus | 20.54 | 32.55 |
| PGSC0003DMT400074101 | Potato | nucleus | 23.21 | 30.83 |
| CDY11556 | Canola | nucleus | 24.4 | 30.83 |
| KRH39044 | Soybean | nucleus | 34.52 | 30.05 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 35.12 | 29.8 |
| Solyc06g068930.1.1 | Tomato | nucleus | 21.73 | 29.67 |
| CDY09470 | Canola | nucleus | 24.11 | 29.56 |
| Solyc03g118540.2.1 | Tomato | cytosol | 27.98 | 28.83 |
| CDY69855 | Canola | nucleus | 23.21 | 28.47 |
| CDX96270 | Canola | cytosol | 21.43 | 27.27 |
| PGSC0003DMT400036790 | Potato | cytosol | 30.36 | 26.15 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 27.08 | 22.2 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 26.19 | 21.46 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 25.89 | 20.96 |
Protein Annotations
| EnsemblPlants:CDX92171 | EnsemblPlantsGene:GSBRNA2T00153872001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDX92171 | ProteinID:CDX92171.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0004EEDB21 | MapMan:15.5.45 | : | : |
Description
BnaA05g22360D
Coordinates
chrLK031871:+:616339..619335
Molecular Weight (calculated)
35873.0 Da
IEP (calculated)
9.900
GRAVY (calculated)
-0.474
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSK KGSAASSQFL SFRPSQDDRH RKPGNYHLPH SGSFMPSSVA ADVYDSNRNT PYSSVQGARM
101: FPNSHQQQES ITVSMARPGL QSHYAPGGKS FMSNGVNSQP FVGVPIMAPP ISVLPAPGSI VGTTDIRSSS KPLGSPAQLT VFYAGSVCVY DDISPDKAKA
201: IMLLAGNGSS MPQAFSPPQT HQQVAHHARA SVDSSAMPPS FMPTVSYLSP EAGSSTNVLG ARGFASTYHN NQTNASTVKP QTVALPQARK ASLARFLEKR
301: KERVTSVSPY CLDKKSPTDC RTPISECISS SFSSAT
101: FPNSHQQQES ITVSMARPGL QSHYAPGGKS FMSNGVNSQP FVGVPIMAPP ISVLPAPGSI VGTTDIRSSS KPLGSPAQLT VFYAGSVCVY DDISPDKAKA
201: IMLLAGNGSS MPQAFSPPQT HQQVAHHARA SVDSSAMPPS FMPTVSYLSP EAGSSTNVLG ARGFASTYHN NQTNASTVKP QTVALPQARK ASLARFLEKR
301: KERVTSVSPY CLDKKSPTDC RTPISECISS SFSSAT
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.