CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73261
CDX84081
CDX92171
CDX95810
CDY26910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17380.1	CDX73261	AT1G32640.1	19309455
AT1G17380.1	CDX84081	AT1G32640.1	19309455
AT1G17380.1	CDY26910	AT1G32640.1	19309455
AT1G17380.1	CDX92171	AT3G17860.1	19309455
AT1G17380.1	CDX95810	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26248	Canola	mitochondrion, nucleus	58.62	64.15
CDX96772	Canola	nucleus	50.0	54.31
AT1G17380.1	Thale cress	nucleus	43.1	45.62
CDY71875	Canola	cytosol	32.41	41.78
CDX72916	Canola	nucleus	34.14	36.53
CDY71173	Canola	nucleus	33.1	35.29
CDY03638	Canola	nucleus	32.41	34.43
CDX81823	Canola	plastid	38.97	34.04
CDX96409	Canola	nucleus	30.34	32.12
CDX73127	Canola	cytosol	22.76	26.94
CDY37269	Canola	nucleus	21.38	25.83
CDY46022	Canola	nucleus	21.38	25.83
CDX85865	Canola	cytosol	19.66	25.45
CDY45408	Canola	cytosol	21.38	25.31
PGSC0003DMT400011155	Potato	nucleus	16.9	24.5
CDX83781	Canola	plastid	22.07	24.24
KRH47640	Soybean	nucleus	19.31	24.14
CDY26697	Canola	plastid	21.03	24.11
CDX96675	Canola	plastid	21.72	23.95
CDY41023	Canola	plastid	20.69	23.62
CDX73289	Canola	cytosol	15.17	23.4
CDY16574	Canola	cytoskeleton, cytosol, nucleus	15.86	23.12
CDX68156	Canola	cytosol	14.14	22.65
Solyc12g049400.1.1	Tomato	cytosol	15.52	22.5
CDX92427	Canola	cytosol	15.52	22.39
KRH06217	Soybean	nucleus, plastid	17.59	22.17
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	20.0	20.28
CDY09086	Canola	cytosol	14.83	19.46
Solyc03g122190.2.1	Tomato	nucleus	18.62	17.48
PGSC0003DMT400058918	Potato	nucleus	18.28	17.15
CDX81917	Canola	plastid	23.1	13.19
CDY21679	Canola	plastid	22.41	11.93

Protein Annotations

EnsemblPlants:CDY48300	EnsemblPlantsGene:GSBRNA2T00089260001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDY48300	ProteinID:CDY48300.1
SMART:SM00979	UniParc:UPI0004EEF0E3	UniProt:A0A078IBN7	MapMan:15.5.45	:	:

Description

BnaC05g13540DBnaC05g13540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBN7]

Coordinates

chrLK032765:-:16906..18736

Molecular Weight (calculated)

32447.5 Da

IEP (calculated)

10.231

GRAVY (calculated)

-0.697

Length

290 amino acids

Sequence
(BLAST)

001: MSRNENAKAQ PLEKSNFTRR CSLLSRYLKE KGSFGNINLG LIRKPNSDRV LSGNSDPPGK QHKADSETKT LDVFQRVLKG EPSPGKANED SNLSNPSEPG
101: SSQLTIFFGG KVLVYNEFPT DKAKEILEVA KQAKPATDIN IKTQINVENN DKKSNMVLPD LNEPTNSVDI VNQQNQVVER IARRASLHRF FAKRKDRAVA
201: RAPYQVNQNA GHHHYPPKPE TAHGRPLESG QSSKAPEKAV VQTSPSQNQK GVVILFYISI IVEIVKVNQS ACFRKYVFED GMTRLDFFFL

Best Arabidopsis Sequence Match ( AT1G17380.1 )
(BLAST)

001: MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL

Arabidopsis Description

TIFY11AProtein TIFY 11A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.