Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17380.1 | CDX73261 | AT1G32640.1 | 19309455 |
| AT1G17380.1 | CDX84081 | AT1G32640.1 | 19309455 |
| AT1G17380.1 | CDY26910 | AT1G32640.1 | 19309455 |
| AT1G17380.1 | CDX92171 | AT3G17860.1 | 19309455 |
| AT1G17380.1 | CDX95810 | AT3G17860.1 | 19309455 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016604.1-P | Field mustard | nucleus | 93.26 | 92.22 |
| CDY71875 | Canola | cytosol | 46.44 | 55.11 |
| CDY48300 | Canola | cytosol, mitochondrion, nucleus, vacuole | 54.31 | 50.0 |
| CDY26248 | Canola | mitochondrion, nucleus | 46.82 | 47.17 |
| AT1G17380.1 | Thale cress | nucleus | 45.69 | 44.53 |
| CDX72916 | Canola | nucleus | 37.08 | 36.53 |
| CDY71173 | Canola | nucleus | 36.33 | 35.66 |
| CDY03638 | Canola | nucleus | 35.58 | 34.8 |
| CDX81823 | Canola | plastid | 43.07 | 34.64 |
| CDX96409 | Canola | nucleus | 34.83 | 33.94 |
| CDY46022 | Canola | nucleus | 25.47 | 28.33 |
| CDX73127 | Canola | cytosol | 25.47 | 27.76 |
| CDY37269 | Canola | nucleus | 24.72 | 27.5 |
| CDY45408 | Canola | cytosol | 24.72 | 26.94 |
| PGSC0003DMT400011155 | Potato | nucleus | 19.48 | 26.0 |
| CDX85865 | Canola | cytosol | 21.72 | 25.89 |
| CDY26697 | Canola | plastid | 23.97 | 25.3 |
| CDY41023 | Canola | plastid | 23.97 | 25.2 |
| CDX96675 | Canola | plastid | 24.72 | 25.1 |
| KRH47640 | Soybean | nucleus | 21.72 | 25.0 |
| CDX83781 | Canola | plastid | 24.72 | 25.0 |
| CDX73289 | Canola | cytosol | 17.23 | 24.47 |
| Solyc12g049400.1.1 | Tomato | cytosol | 17.98 | 24.0 |
| CDX68156 | Canola | cytosol | 16.1 | 23.76 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 17.23 | 23.12 |
| KRH06217 | Soybean | nucleus, plastid | 19.85 | 23.04 |
| CDX92427 | Canola | cytosol | 16.48 | 21.89 |
| VIT_09s0002g00890.t01 | Wine grape | nucleus, plastid | 22.85 | 21.33 |
| CDY09086 | Canola | cytosol | 16.85 | 20.36 |
| Solyc03g122190.2.1 | Tomato | nucleus | 21.72 | 18.77 |
| PGSC0003DMT400058918 | Potato | nucleus | 21.35 | 18.45 |
| CDX81917 | Canola | plastid | 26.59 | 13.98 |
| CDY21679 | Canola | plastid | 26.22 | 12.84 |
Protein Annotations
| EnsemblPlants:CDX96772 | EnsemblPlantsGene:GSBRNA2T00103000001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDX96772 | ProteinID:CDX96772.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0004EE0C43 | MapMan:15.5.45 | : | : |
Description
BnaA08g23150D
Coordinates
chrLK031895:+:925364..926904
Molecular Weight (calculated)
29708.1 Da
IEP (calculated)
9.573
GRAVY (calculated)
-0.948
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRNEDGKAP PPEKSNFTRR CSLLSRYLKE KGSFGNIDLG LVRKPGPDLG LPGNSDQQEK QKVMHKANSE LKALNVLGEP SSSFGGKAKA TNLSEPSEPV
101: SSQLTIFFGG KVLVYNEFPS DKAKEIIQVA KEAKSVTDIN IQTQINVQKD HNKSNMVLPD LNEPTDTADV KQQQQQQNQL VERIARRASL HRFFAKRKDR
201: AVARAPYQVN QNGGGHHYPP KPETVPGQQL EQGQSSQPQR PAQPKPECDK DMLMEEGQCS KDLELRL
101: SSQLTIFFGG KVLVYNEFPS DKAKEIIQVA KEAKSVTDIN IQTQINVQKD HNKSNMVLPD LNEPTDTADV KQQQQQQNQL VERIARRASL HRFFAKRKDR
201: AVARAPYQVN QNGGGHHYPP KPETVPGQQL EQGQSSQPQR PAQPKPECDK DMLMEEGQCS KDLELRL
001: MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL
Arabidopsis Description
TIFY11AProtein TIFY 11A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.