Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20900.1 | CDX73261 | AT1G32640.1 | 19309455 |
| AT5G20900.1 | CDX84081 | AT1G32640.1 | 19309455 |
| AT5G20900.1 | CDY26910 | AT1G32640.1 | 19309455 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92427 | Canola | cytosol | 79.4 | 78.61 |
| AT5G20900.1 | Thale cress | cytosol | 54.27 | 57.75 |
| CDY09086 | Canola | cytosol | 55.78 | 50.23 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 27.64 | 36.67 |
| KRH12644 | Soybean | nucleus | 34.17 | 33.83 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 34.67 | 33.5 |
| GSMUA_Achr10P... | Banana | cytosol | 28.14 | 31.64 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 29.15 | 31.35 |
| Os04t0653000-01 | Rice | cytosol, nucleus, plastid | 33.17 | 30.56 |
| Zm00001d002029_P003 | Maize | nucleus | 32.66 | 30.09 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 23.12 | 29.68 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 25.63 | 29.48 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 24.12 | 29.27 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 27.64 | 29.26 |
| OQU82468 | Sorghum | nucleus | 31.66 | 28.77 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 27.64 | 27.64 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 28.64 | 27.54 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 27.64 | 27.36 |
| Zm00001d026477_P002 | Maize | nucleus | 29.65 | 25.65 |
| Zm00001d021924_P001 | Maize | plastid | 17.59 | 25.55 |
| Zm00001d046270_P001 | Maize | plastid | 17.59 | 25.55 |
| KRH02523 | Soybean | cytosol | 25.13 | 25.38 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 27.64 | 25.11 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 27.64 | 24.12 |
| CDX73289 | Canola | cytosol | 22.11 | 23.4 |
| CDX68156 | Canola | cytosol | 19.6 | 21.55 |
| KRH19420 | Soybean | nucleus | 21.11 | 20.29 |
| CDX85865 | Canola | cytosol | 22.61 | 20.09 |
| CDX73127 | Canola | cytosol | 24.62 | 20.0 |
| CDY37269 | Canola | nucleus | 23.62 | 19.58 |
| CDY71875 | Canola | cytosol | 22.11 | 19.56 |
| Zm00001d013855_P002 | Maize | plastid | 22.11 | 19.21 |
| CDY45408 | Canola | cytosol | 23.62 | 19.18 |
| CDY26697 | Canola | plastid | 24.12 | 18.97 |
| CDY46022 | Canola | nucleus | 22.61 | 18.75 |
| CDY03638 | Canola | nucleus | 25.63 | 18.68 |
| CDX83781 | Canola | plastid | 24.62 | 18.56 |
| CDY71173 | Canola | nucleus | 25.13 | 18.38 |
| CDY41023 | Canola | plastid | 23.12 | 18.11 |
| CDX96675 | Canola | plastid | 23.62 | 17.87 |
| CDY26248 | Canola | mitochondrion, nucleus | 23.12 | 17.36 |
| CDX96772 | Canola | nucleus | 23.12 | 17.23 |
| CDY48300 | Canola | cytosol, mitochondrion, nucleus, vacuole | 23.12 | 15.86 |
| CDX72916 | Canola | nucleus | 20.6 | 15.13 |
| CDX96409 | Canola | nucleus | 20.6 | 14.96 |
| CDX81823 | Canola | plastid | 20.6 | 12.35 |
| CDX81917 | Canola | plastid | 23.62 | 9.25 |
| CDY21679 | Canola | plastid | 23.12 | 8.44 |
Protein Annotations
| EnsemblPlants:CDY16574 | EnsemblPlantsGene:GSBRNA2T00094372001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDY16574 | ProteinID:CDY16574.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0004EE91FB | UniProt:A0A078FUB2 | MapMan:15.5.45 | : |
Description
BnaC09g36990DBnaC09g36990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUB2]
Coordinates
chrLK032065:+:327611..329017
Molecular Weight (calculated)
21020.6 Da
IEP (calculated)
6.950
GRAVY (calculated)
-0.458
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKVEEEPRA SVEGGCGVGG EEIGGNGTVH GSTAGSVAGE GAEKEIHEAR SLEVPSSEPE ASTIRPNQLT IFFGGKVRVF DGIPADKIQE IIRIAAAAAK
101: SIETKNSTNT SPVASPALNR APSLSSTSNA ASPATQSFPI HPISFCRSAA DLPIARRHSL QRFLEKRRDR LVSKNPYPAS DKKTDVPRDS ASIEEYPTA
101: SIETKNSTNT SPVASPALNR APSLSSTSNA ASPATQSFPI HPISFCRSAA DLPIARRHSL QRFLEKRRDR LVSKNPYPAS DKKTDVPRDS ASIEEYPTA
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Arabidopsis Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.