Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 31.71 | 29.38 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 32.32 | 28.65 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 26.83 | 28.39 |
| Bra002338.1-P | Field mustard | cytosol | 30.49 | 24.88 |
| CDX92427 | Canola | cytosol | 29.88 | 24.38 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 29.27 | 24.12 |
| AT5G20900.1 | Thale cress | cytosol | 25.0 | 21.93 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 28.05 | 21.0 |
| KRH02523 | Soybean | cytosol | 24.39 | 20.3 |
| KRH12644 | Soybean | nucleus | 24.39 | 19.9 |
| KRH19420 | Soybean | nucleus | 24.39 | 19.32 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 26.83 | 19.3 |
| Bra020135.1-P | Field mustard | cytosol | 25.61 | 19.0 |
| CDY09086 | Canola | cytosol | 25.61 | 19.0 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 23.78 | 18.93 |
| GSMUA_Achr10P... | Banana | cytosol | 18.29 | 18.52 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 21.34 | 15.84 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 20.12 | 15.79 |
| AT3G43440.1 | Thale cress | cytosol | 21.95 | 15.13 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 23.17 | 15.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.34 | 14.17 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 19.51 | 14.16 |
| GSMUA_Achr11P... | Banana | cytosol | 19.51 | 13.79 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 20.12 | 13.69 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 20.12 | 13.64 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 17.68 | 13.62 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 19.51 | 12.96 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 20.73 | 12.83 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 18.29 | 11.95 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 24.39 | 11.33 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P22010_001 | EnsemblPlants:GSMUA_Achr5T22010_001 | EnsemblPlantsGene:GSMUA_Achr5G22010_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| UniParc:UPI000295327B | UniProt:M0T0M6 | MapMan:15.5.45 | : | : | : |
Description
Putative Transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr5G22010_001]
Coordinates
chr5:+:24161804..24163804
Molecular Weight (calculated)
17853.7 Da
IEP (calculated)
11.344
GRAVY (calculated)
-0.399
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHFDARIEA ERKEMEKNSA GHSLRMPMAK LTTMFHGRRV RAYNAIPRDK ARAILLIAAA ATKTPAIVGP SAATAAALLG PLLTRSLSLQ SSTAGEPPQV
101: ELQAELPMAR RKSLQRFLEK RRNRLVSAAP YASAKSLDME GDSERRPQLN SASLLAMTTK STGN
101: ELQAELPMAR RKSLQRFLEK RRNRLVSAAP YASAKSLDME GDSERRPQLN SASLLAMTTK STGN
001: MAEVNGDFPV PSFADGTGSV SAGLDLLVER SIHEARSTEP DASTQLTIIF GGSCRVFNGV PAQKVQEILH IAAAAKATET INLTSINPAL KRAISFSNAS
101: TVACVSTADV PIARRRSLQR FFEKRRHRFV HTKPYSATTS EADKNETSPI VT
101: TVACVSTADV PIARRRSLQR FFEKRRHRFV HTKPYSATTS EADKNETSPI VT
Arabidopsis Description
TIFY3AProtein TIFY 3A [Source:UniProtKB/Swiss-Prot;Acc:Q9M246]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.