Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010178.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20900.1 | Bra010178.1-P | AT1G32640.1 | 19309455 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09086 | Canola | cytosol | 80.09 | 80.09 |
| AT5G20900.1 | Thale cress | cytosol | 50.23 | 59.36 |
| Bra002338.1-P | Field mustard | cytosol | 47.51 | 52.24 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 24.43 | 36.0 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 27.6 | 32.45 |
| KRH12644 | Soybean | nucleus | 29.41 | 32.34 |
| Os04t0653000-01 | Rice | cytosol, nucleus, plastid | 31.22 | 31.94 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 28.51 | 31.66 |
| Zm00001d002029_P003 | Maize | nucleus | 30.77 | 31.48 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 28.51 | 31.34 |
| GSMUA_Achr10P... | Banana | cytosol | 24.89 | 31.07 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 28.96 | 31.07 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 28.96 | 30.92 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 25.79 | 30.81 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 21.27 | 30.32 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 23.53 | 30.06 |
| OQU82468 | Sorghum | nucleus | 28.51 | 28.77 |
| Zm00001d026477_P002 | Maize | nucleus | 28.05 | 26.96 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 19.0 | 25.61 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 24.43 | 24.66 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 25.34 | 24.56 |
| KRH19420 | Soybean | nucleus | 22.62 | 24.15 |
| KRH02523 | Soybean | cytosol | 20.36 | 22.84 |
| Zm00001d046270_P001 | Maize | plastid | 13.57 | 21.9 |
| Zm00001d021924_P001 | Maize | plastid | 13.57 | 21.9 |
| Bra025713.1-P | Field mustard | plastid | 23.98 | 20.87 |
| Bra015880.1-P | Field mustard | cytosol | 22.62 | 20.41 |
| Bra003778.1-P | Field mustard | cytosol | 20.36 | 20.27 |
| Bra016520.1-P | Field mustard | plastid | 23.08 | 19.69 |
| Bra008172.1-P | Field mustard | nucleus | 20.81 | 19.17 |
| Zm00001d013855_P002 | Maize | plastid | 19.0 | 18.34 |
| Bra031065.1-P | Field mustard | plastid | 21.72 | 17.58 |
| Bra008033.1-P | Field mustard | nucleus | 20.81 | 16.85 |
| Bra016604.1-P | Field mustard | nucleus | 19.91 | 16.3 |
| Bra025977.1-P | Field mustard | nucleus | 18.1 | 15.62 |
| Bra016056.1-P | Field mustard | nucleus | 18.1 | 14.6 |
| Bra030986.1-P | Field mustard | nucleus | 19.0 | 14.05 |
Protein Annotations
Description
AT5G20900 (E=8e-050) JAZ12, TIFY3B | JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)
Coordinates
chrA02:+:5199752..5201091
Molecular Weight (calculated)
23110.2 Da
IEP (calculated)
4.716
GRAVY (calculated)
-0.249
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKVEVEPRA PVEGGCGDIL GCGVVDGDGD EENHVVEIAG NGTVNGTIDG SVAGEGGFSA EEPVHEARST DAPSSDVPDP STILPNQLTI FFGGKVCVFD
101: GIPAEKIQEI IRIAAAATAK SIETKNSTSV KPVLSPALNR APSFSSTSTG ASPAAPSLPV NPIPFCRSPA DLPIARRHSL QRFLEKRRDR LVNKNPYPAS
201: DMKKTDVPTD IASIKEESPI A
101: GIPAEKIQEI IRIAAAATAK SIETKNSTSV KPVLSPALNR APSFSSTSTG ASPAAPSLPV NPIPFCRSPA DLPIARRHSL QRFLEKRRDR LVNKNPYPAS
201: DMKKTDVPTD IASIKEESPI A
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Arabidopsis Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.