Factsheet for Os04t0653000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0543700-00
Os09t0519100-00
Os10t0575000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43440.1	Os08t0543700-00	AT1G32640.1	19309455
AT3G43440.1	Os09t0519100-00	AT1G32640.1	19309455
AT3G43440.1	Os10t0575000-01	AT1G32640.1	19309455
AT5G20900.1	Os08t0543700-00	AT1G32640.1	19309455
AT5G20900.1	Os09t0519100-00	AT1G32640.1	19309455
AT5G20900.1	Os10t0575000-01	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82468	Sorghum	nucleus	60.65	59.82
HORVU2Hr1G112360.1	Barley	cytosol, mitochondrion, nucleus	49.54	53.77
TraesCS2A01G506500.1	Wheat	cytosol	50.0	53.73
TraesCS2B01G534800.1	Wheat	extracellular	45.37	52.13
TraesCS2D01G507200.1	Wheat	nucleus	46.76	48.79
GSMUA_Achr4P09660_001	Banana	cytosol	40.74	40.18
KRH12644	Soybean	nucleus	32.41	34.83
GSMUA_Achr8P24590_001	Banana	nucleus	35.65	33.77
AT5G20900.1	Thale cress	cytosol	29.17	33.69
KRH37606	Soybean	cytosol, nucleus, plastid	31.94	33.5
CDY16574	Canola	cytoskeleton, cytosol, nucleus	30.56	33.17
CDY09086	Canola	cytosol	32.41	31.67
CDX92427	Canola	cytosol	29.17	31.34
Bra002338.1-P	Field mustard	cytosol	29.17	31.34
Bra020135.1-P	Field mustard	cytosol	31.94	31.22
Zm00001d021924_P001	Maize	plastid	18.06	28.47
Zm00001d046270_P001	Maize	plastid	18.06	28.47
Os07t0615200-01	Rice	mitochondrion	25.93	22.95
Os03t0402800-01	Rice	plastid	24.07	22.81
AT3G43440.1	Thale cress	cytosol	24.07	21.85
KRH02523	Soybean	cytosol	19.91	21.83
KRH19420	Soybean	nucleus	20.83	21.74
Os09t0439200-01	Rice	plastid	20.37	18.97

Protein Annotations

MapMan:15.5.45	EntrezGene:4337240	EMBL:AK059441	EMBL:AK069326	EMBL:AP014960	ProteinID:BAF16017.1
ProteinID:CAE03550.1	InterPro:CCT_CS	ProteinID:EAZ32236.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003714
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009653
GO:GO:0009719	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010582	GO:GO:0031347
GO:GO:0048449	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	EnsemblPlantsGene:Os04g0653000	EnsemblPlants:Os04t0653000-01
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF5	UniProt:Q7XPM8
SMART:SM00979	InterPro:Tify_dom	UniParc:UPI00001B172E	RefSeq:XP_015635690.1	SEG:seg	:

Description

EXTRA GLUME 2Jasmonic acid (JA) signalling repressor, Regulation of spikelet development (Os04t0653000-01)

Coordinates

chr4:+:33306468..33310169

Molecular Weight (calculated)

22932.4 Da

IEP (calculated)

7.418

GRAVY (calculated)

-0.403

Length

216 amino acids

Sequence
(BLAST)

001: MDLLEKKNIK KGGEVEEEVA RKGEERKEEE VVVEEKSHQQ QQQQGEEELV GLSLAGGRPK VFPMSSPPPN PSQLTIFYGG SVCVYDSVPP EKAQAIMLIA
101: AAAAAAASAT KSNAAIAVKP PVMPAANATQ AAVSPVLTRS LSLQSTSVAT GQPQVAADPS SICKLQADLP IARRHSLQRF LEKRRDRLVS KAPYPTKSSE
201: GMEASGMEVT AEGKAQ

Best Arabidopsis Sequence Match ( AT5G20900.1 )
(BLAST)

001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA

Arabidopsis Description

TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.