Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02523 | Soybean | cytosol | 57.97 | 60.91 |
| KRH12644 | Soybean | nucleus | 32.37 | 33.33 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 23.67 | 32.67 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 30.92 | 31.07 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 24.15 | 27.03 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 19.32 | 25.81 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 19.32 | 24.39 |
| GSMUA_Achr10P... | Banana | cytosol | 20.77 | 24.29 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 20.29 | 24.28 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 22.71 | 23.62 |
| Bra002338.1-P | Field mustard | cytosol | 22.22 | 22.89 |
| Bra020135.1-P | Field mustard | cytosol | 24.15 | 22.62 |
| CDX92427 | Canola | cytosol | 21.74 | 22.39 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 20.29 | 22.34 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 22.22 | 22.22 |
| Zm00001d021924_P001 | Maize | plastid | 14.49 | 21.9 |
| Zm00001d046270_P001 | Maize | plastid | 14.49 | 21.9 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 21.26 | 21.89 |
| CDY09086 | Canola | cytosol | 23.19 | 21.72 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 20.29 | 21.11 |
| AT5G20900.1 | Thale cress | cytosol | 18.84 | 20.86 |
| Os04t0653000-01 | Rice | cytosol, nucleus, plastid | 21.74 | 20.83 |
| Zm00001d002029_P003 | Maize | nucleus | 21.26 | 20.37 |
| OQU82468 | Sorghum | nucleus | 20.77 | 19.63 |
| Zm00001d026477_P002 | Maize | nucleus | 21.74 | 19.57 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 20.77 | 18.86 |
| KRH51545 | Soybean | cytosol | 14.49 | 18.75 |
| KRH60862 | Soybean | nucleus | 17.87 | 18.41 |
| KRH77291 | Soybean | mitochondrion | 16.43 | 17.44 |
| KRH47640 | Soybean | nucleus | 19.32 | 17.24 |
| KRH37526 | Soybean | nucleus, plastid | 21.26 | 17.05 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 17.87 | 16.89 |
| KRH06217 | Soybean | nucleus, plastid | 18.36 | 16.52 |
| AT3G43440.1 | Thale cress | cytosol | 18.84 | 16.39 |
| KRH12569 | Soybean | nucleus | 20.29 | 16.28 |
| Zm00001d013855_P002 | Maize | plastid | 17.87 | 16.16 |
| KRH02587 | Soybean | plastid | 18.84 | 16.12 |
| KRH19346 | Soybean | cytosol | 17.87 | 15.29 |
| KRH28201 | Soybean | mitochondrion | 10.14 | 10.34 |
Protein Annotations
| MapMan:15.5.45 | EMBL:ACUP02008180 | InterPro:CCT_CS | EnsemblPlantsGene:GLYMA_13G116100 | GO:GO:0003674 | GO:GO:0003714 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 |
| GO:GO:0009719 | GO:GO:0009987 | GO:GO:0031347 | GO:GO:1903507 | GO:GO:2000022 | UniProt:I1LYC4 |
| InterPro:IPR010399 | EnsemblPlants:KRH19420 | ProteinID:KRH19420 | ProteinID:KRH19420.1 | PFAM:PF06200 | PFAM:PF09425 |
| PFscan:PS51320 | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 | SMART:SM00979 | InterPro:Tify_dom | UniParc:UPI00023CF10E |
Description
hypothetical protein
Coordinates
chr13:+:22961118..22964374
Molecular Weight (calculated)
22711.1 Da
IEP (calculated)
10.547
GRAVY (calculated)
-0.503
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVNPEAGG WKAYPSVMET ALDSGDGRSH HNMSDDGSVM HFSATRSVAV PSSGQNKVIP SPTQFSILYK GKMCIYEGIP AEKVREIMLI ASVSAKSAEM
101: KSGIRLTSFI PKSPSSSQGN STNLPSPQSV KSSIRRLQDE FPLARRQSLQ RFLEKRRNRL ANKSPHALTK NVVHNPDKGF SPDDTPDFGL LNLNFQRRDF
201: SPVVLPL
101: KSGIRLTSFI PKSPSSSQGN STNLPSPQSV KSSIRRLQDE FPLARRQSLQ RFLEKRRNRL ANKSPHALTK NVVHNPDKGF SPDDTPDFGL LNLNFQRRDF
201: SPVVLPL
001: MAEVNGDFPV PSFADGTGSV SAGLDLLVER SIHEARSTEP DASTQLTIIF GGSCRVFNGV PAQKVQEIIR IAFAGKQTKN VTGINPALNR ALSFSTVADL
101: PIARRRSLQR FLEKRRDRST KPDGSMILPS QLTIIFGGSF SVFDGIPAEK VQEILHIAAA AKATETINLT SINPALKRAI SFSNASTVAC VSTADVPIAR
201: RRSLQRFFEK RRHRFVHTKP YSATTSEADK NETSPIVT
101: PIARRRSLQR FLEKRRDRST KPDGSMILPS QLTIIFGGSF SVFDGIPAEK VQEILHIAAA AKATETINLT SINPALKRAI SFSNASTVAC VSTADVPIAR
201: RRSLQRFFEK RRHRFVHTKP YSATTSEADK NETSPIVT
Arabidopsis Description
TIFY3AProtein TIFY 3A [Source:UniProtKB/Swiss-Prot;Acc:Q9M246]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.