Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002029_P003 | Maize | nucleus | 74.43 | 75.46 |
| Os04t0653000-01 | Rice | cytosol, nucleus, plastid | 59.82 | 60.65 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 52.51 | 57.79 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 48.4 | 56.38 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 51.14 | 55.72 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 48.4 | 51.21 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 36.99 | 36.99 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 34.7 | 33.33 |
| AT5G20900.1 | Thale cress | cytosol | 27.85 | 32.62 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 28.77 | 31.66 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 29.22 | 31.07 |
| KRH12644 | Soybean | nucleus | 28.31 | 30.85 |
| CDY09086 | Canola | cytosol | 29.22 | 28.96 |
| CDX92427 | Canola | cytosol | 26.48 | 28.86 |
| Bra020135.1-P | Field mustard | cytosol | 28.77 | 28.51 |
| Bra002338.1-P | Field mustard | cytosol | 26.03 | 28.36 |
| AT3G43440.1 | Thale cress | cytosol | 25.11 | 23.11 |
| EER98969 | Sorghum | cytosol | 21.46 | 21.27 |
| KRH19420 | Soybean | nucleus | 19.63 | 20.77 |
| EER97533 | Sorghum | plastid | 21.46 | 20.0 |
| KRH02523 | Soybean | cytosol | 17.35 | 19.29 |
| EER92157 | Sorghum | plastid | 18.72 | 17.98 |
Protein Annotations
| MapMan:15.5.45 | UniProt:A0A1Z5RFF1 | InterPro:CCT_CS | ncoils:Coil | GO:GO:0000003 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010582 | GO:GO:0048449 | GO:GO:2000022 | InterPro:IPR010399 |
| EnsemblPlants:OQU82468 | ProteinID:OQU82468 | ProteinID:OQU82468.1 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 | SMART:SM00979 | EnsemblPlantsGene:SORBI_3006G244800 | InterPro:Tify_dom | UniParc:UPI0001FCCDA4 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:58463788..58467690
Molecular Weight (calculated)
23169.6 Da
IEP (calculated)
8.196
GRAVY (calculated)
-0.470
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLERNIKK GDTTEEEKAR KEDERKEEEE VGERKTKTQD QEPQPQGQVL SLSLANGSAR SGMLPMANPS ANPAQLTIFY GGSVCVYDSV PPEKAQAIML
101: IAAAAAAAAA TKGSAATAVK PPMMPAATVA PAAVVSPVLT RSPSLQSTSV ANGQPQVVAD PSSICKLQAD LPIARRHSLQ RFLEKRRDRI VSKAPYSPAK
201: SSDGMESPGM EVTAEGKTQ
101: IAAAAAAAAA TKGSAATAVK PPMMPAATVA PAAVVSPVLT RSPSLQSTSV ANGQPQVVAD PSSICKLQAD LPIARRHSLQ RFLEKRRDRI VSKAPYSPAK
201: SSDGMESPGM EVTAEGKTQ
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Arabidopsis Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.