Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU75588 | Sorghum | nucleus | 50.0 | 48.67 |
| OQU80776 | Sorghum | nucleus | 50.0 | 48.67 |
| KXG25462 | Sorghum | nucleus | 50.39 | 46.4 |
| OQU80778 | Sorghum | nucleus | 48.05 | 45.56 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 49.61 | 45.52 |
| Os08t0543700-00 | Rice | nucleus, peroxisome, plastid | 46.09 | 44.87 |
| OQU80777 | Sorghum | nucleus | 48.44 | 44.29 |
| EER99201 | Sorghum | nucleus | 49.22 | 42.57 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 42.58 | 39.49 |
| Bra017527.1-P | Field mustard | nucleus | 25.0 | 28.32 |
| Bra024992.1-P | Field mustard | nucleus | 25.39 | 23.99 |
| Bra013263.1-P | Field mustard | nucleus | 25.0 | 23.62 |
| VIT_02s0025g02610.t01 | Wine grape | nucleus | 28.12 | 19.94 |
| CDY70013 | Canola | nucleus | 19.14 | 19.44 |
| PGSC0003DMT400028057 | Potato | nucleus | 28.12 | 18.51 |
| PGSC0003DMT400014089 | Potato | nucleus | 27.73 | 18.49 |
| AT4G00870.1 | Thale cress | nucleus, plastid | 30.08 | 18.2 |
| Solyc10g009290.1.1 | Tomato | nucleus | 31.64 | 17.96 |
| Solyc10g009270.2.1 | Tomato | nucleus | 27.34 | 17.81 |
| Solyc01g096370.2.1 | Tomato | nucleus | 30.47 | 17.33 |
| VIT_15s0048g02820.t01 | Wine grape | nucleus | 33.59 | 17.3 |
| PGSC0003DMT400014097 | Potato | nucleus | 30.86 | 17.29 |
| PGSC0003DMT400047220 | Potato | nucleus | 30.47 | 17.26 |
| KRH47834 | Soybean | nucleus | 31.25 | 17.24 |
| PGSC0003DMT400031899 | Potato | plastid | 28.12 | 16.71 |
| Solyc08g083170.1.1 | Tomato | extracellular | 25.0 | 16.54 |
| KRH06400 | Soybean | nucleus | 30.08 | 16.52 |
| Bra017520.1-P | Field mustard | nucleus | 28.91 | 14.86 |
| Solyc08g005050.2.1 | Tomato | nucleus | 26.56 | 14.66 |
| AT5G46830.1 | Thale cress | nucleus | 28.91 | 14.48 |
| PGSC0003DMT400002963 | Potato | nucleus | 33.2 | 14.21 |
| Bra017523.1-P | Field mustard | nucleus | 28.12 | 14.2 |
| AT4G17880.1 | Thale cress | nucleus | 32.42 | 14.09 |
| Bra010178.1-P | Field mustard | nucleus | 32.81 | 14.0 |
| KRH75613 | Soybean | nucleus | 34.77 | 13.97 |
| Bra024998.1-P | Field mustard | nucleus | 31.25 | 13.79 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 35.55 | 13.73 |
| EES01345 | Sorghum | nucleus | 25.78 | 13.64 |
| KRH45440 | Soybean | nucleus | 34.77 | 13.61 |
| AT5G46760.1 | Thale cress | nucleus | 31.25 | 13.51 |
| AT1G32640.1 | Thale cress | nucleus | 32.42 | 13.32 |
| OQU92032 | Sorghum | nucleus | 17.58 | 13.24 |
| KRH74418 | Soybean | nucleus | 32.42 | 12.93 |
| KXG39824 | Sorghum | nucleus | 16.41 | 12.88 |
| PGSC0003DMT400015017 | Potato | nucleus | 22.66 | 12.72 |
| Solyc08g076930.1.1 | Tomato | nucleus | 33.98 | 12.63 |
| Solyc08g008600.2.1 | Tomato | nucleus | 22.27 | 12.61 |
| EES10849 | Sorghum | nucleus | 16.8 | 12.46 |
| PGSC0003DMT400045204 | Potato | nucleus | 33.59 | 12.39 |
| OQU92034 | Sorghum | nucleus | 15.23 | 12.3 |
| EER93684 | Sorghum | nucleus | 18.36 | 12.21 |
| KXG39194 | Sorghum | nucleus | 33.2 | 12.02 |
| Bra024993.1-P | Field mustard | nucleus | 17.19 | 11.67 |
| KXG37671 | Sorghum | nucleus | 16.02 | 11.52 |
| EER93685 | Sorghum | mitochondrion | 16.41 | 11.29 |
| KRH39540 | Soybean | nucleus | 32.03 | 11.22 |
| KXG24110 | Sorghum | nucleus | 17.19 | 11.06 |
| KXG37866 | Sorghum | nucleus | 16.02 | 11.05 |
| OQU77369 | Sorghum | nucleus | 17.58 | 10.71 |
| EES19274 | Sorghum | nucleus | 23.44 | 10.22 |
| OQU75589 | Sorghum | nucleus | 15.23 | 10.13 |
| EER99993 | Sorghum | nucleus | 22.66 | 9.32 |
| OQU82119 | Sorghum | nucleus | 18.75 | 8.79 |
| OQU82117 | Sorghum | nucleus | 19.92 | 8.64 |
| OQU88697 | Sorghum | nucleus | 22.27 | 8.42 |
| OQU81560 | Sorghum | nucleus | 18.36 | 7.98 |
| OQU82120 | Sorghum | nucleus | 17.97 | 7.82 |
| Bra013264.1-P | Field mustard | nucleus | 5.86 | 5.05 |
| CDY70012 | Canola | nucleus | 3.91 | 3.75 |
Protein Annotations
| EnsemblPlants:OQU86344 | EnsemblPlantsGene:SORBI_3003G077100 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF68 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:OQU86344 | ProteinID:OQU86344.1 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0009DC931D | UniProt:A0A1W0VW53 | MapMan:15.5.32 | : |
Description
hypothetical protein
Coordinates
chr3:-:6560035..6560805
Molecular Weight (calculated)
27583.7 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.297
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDPHFMSPF SADDHRNQNP ASSEFMSSDA LEKWLLGNDQ DNVLDNHEDE DPHQDMSSTS LPSPAAPLAG RKRGRKPGSG SRAAGTTIVV THVEAERLRR
101: DRLNRLFCDL RAAVPTVTGM DRASLLADAV GYITKLHGRV EQLQADAEAN KRTTAASLSQ LPCLLFGGSG QELEVRAVHG RDAAALRLTT TVATRHAPAR
201: LMAALRALDL PVQHASVCRV GGITVQDVVV DMAAAGLWGD DCLRTVLLHK LLQESG
101: DRLNRLFCDL RAAVPTVTGM DRASLLADAV GYITKLHGRV EQLQADAEAN KRTTAASLSQ LPCLLFGGSG QELEVRAVHG RDAAALRLTT TVATRHAPAR
201: LMAALRALDL PVQHASVCRV GGITVQDVVV DMAAAGLWGD DCLRTVLLHK LLQESG
001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG
Arabidopsis Description
MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.