Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033407_P001 | Maize | nucleus | 77.92 | 84.27 |
| TraesCS5D01G517900.1 | Wheat | nucleus | 43.64 | 51.85 |
| TraesCS5B01G518400.1 | Wheat | nucleus | 43.38 | 51.38 |
| TraesCS4A01G354100.1 | Wheat | nucleus | 42.86 | 50.77 |
| TraesCSU01G075200.1 | Wheat | nucleus | 42.34 | 50.31 |
| TraesCS4D01G018800.2 | Wheat | nucleus | 47.01 | 50.0 |
| TraesCS4A01G292700.1 | Wheat | nucleus | 46.23 | 49.58 |
| EES10849 | Sorghum | nucleus | 43.9 | 48.99 |
| TraesCS5B01G518800.1 | Wheat | nucleus | 40.0 | 48.89 |
| Os03t0671800-01 | Rice | nucleus | 48.31 | 48.31 |
| TraesCS4D01G019100.1 | Wheat | nucleus | 45.45 | 48.08 |
| TraesCS4B01G020700.1 | Wheat | nucleus | 45.45 | 47.95 |
| HORVU0Hr1G014300.1 | Barley | nucleus | 41.04 | 47.88 |
| TraesCS5B01G518500.1 | Wheat | nucleus | 40.26 | 47.69 |
| KXG37866 | Sorghum | nucleus | 42.86 | 44.47 |
| EER93685 | Sorghum | mitochondrion | 42.08 | 43.55 |
| KXG24110 | Sorghum | nucleus | 39.22 | 37.94 |
| HORVU4Hr1G003340.3 | Barley | nucleus | 43.9 | 36.5 |
| TraesCSU01G075100.1 | Wheat | nucleus | 31.43 | 35.8 |
| OQU77369 | Sorghum | nucleus | 38.96 | 35.71 |
| OQU75589 | Sorghum | nucleus | 35.58 | 35.58 |
| KXG37671 | Sorghum | nucleus | 30.39 | 32.87 |
| OQU92032 | Sorghum | nucleus | 21.04 | 23.82 |
| KXG39824 | Sorghum | nucleus | 19.74 | 23.31 |
| OQU92034 | Sorghum | nucleus | 16.36 | 19.87 |
| OQU86344 | Sorghum | nucleus | 12.21 | 18.36 |
| OQU80778 | Sorghum | nucleus | 12.73 | 18.15 |
| OQU80776 | Sorghum | nucleus | 11.95 | 17.49 |
| OQU75588 | Sorghum | nucleus | 11.95 | 17.49 |
| KXG25462 | Sorghum | nucleus | 12.47 | 17.27 |
| EER99201 | Sorghum | nucleus | 12.99 | 16.89 |
| OQU80777 | Sorghum | nucleus | 12.21 | 16.79 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 11.95 | 16.67 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 11.43 | 15.77 |
| EES01345 | Sorghum | nucleus | 15.32 | 12.19 |
| EES19274 | Sorghum | nucleus | 14.81 | 9.71 |
| EER99993 | Sorghum | nucleus | 15.58 | 9.65 |
| KXG39194 | Sorghum | nucleus | 17.4 | 9.48 |
| OQU82120 | Sorghum | nucleus | 14.29 | 9.35 |
| OQU81560 | Sorghum | nucleus | 14.03 | 9.17 |
| OQU82117 | Sorghum | nucleus | 14.03 | 9.15 |
| OQU82119 | Sorghum | nucleus | 12.47 | 8.79 |
| OQU88697 | Sorghum | nucleus | 13.51 | 7.68 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | EntrezGene:8056732 | UniProt:C5WPR0 | ncoils:Coil |
| EnsemblPlants:EER93684 | ProteinID:EER93684 | ProteinID:EER93684.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3001G140800 | SUPFAM:SSF47459 | UniParc:UPI0001A82A1E |
| RefSeq:XP_002466686.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:11235481..11238914
Molecular Weight (calculated)
39675.6 Da
IEP (calculated)
5.685
GRAVY (calculated)
-0.211
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSSQFLQW ALSTLQHDDL PPATPAATAA YDDNGCNTAA FSSIPALGYS AASVNSMVPG EPPAREGHRA AAATNSWSSA DTDSGSGGGG TASVTAAQRD
101: AWSPSSQQNL VNCATPRSSG SSGANQQVGW DFNSASAQLI KEAQANSAAA AAAAARAESN GGGGVPVPQP QMVHNNGPPP TKRASAKMSA PSSSPPCSQD
201: HIVAERKRRE KINQRFIELS AVIPCLKKMD KATILSDATR YVKELQEKLK ALQEDGRGME SAVLVKKPRI AAPGDDEDGG APSPSSCATA GAAATARNAL
301: PEIEARILDG NVVMLRIHCE DGKGVLVRVL AEVEGLCLSI THTNVMPLSA CILIINIMAK VLEGFNATAD DIVGRLNAVL AGPAC
101: AWSPSSQQNL VNCATPRSSG SSGANQQVGW DFNSASAQLI KEAQANSAAA AAAAARAESN GGGGVPVPQP QMVHNNGPPP TKRASAKMSA PSSSPPCSQD
201: HIVAERKRRE KINQRFIELS AVIPCLKKMD KATILSDATR YVKELQEKLK ALQEDGRGME SAVLVKKPRI AAPGDDEDGG APSPSSCATA GAAATARNAL
301: PEIEARILDG NVVMLRIHCE DGKGVLVRVL AEVEGLCLSI THTNVMPLSA CILIINIMAK VLEGFNATAD DIVGRLNAVL AGPAC
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.