Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G292700.1 | Wheat | nucleus | 50.65 | 54.32 |
| TraesCS4D01G018800.2 | Wheat | nucleus | 50.39 | 53.59 |
| TraesCS5D01G517900.1 | Wheat | nucleus | 44.94 | 53.4 |
| TraesCS5B01G518400.1 | Wheat | nucleus | 44.94 | 53.23 |
| TraesCS4B01G020700.1 | Wheat | nucleus | 50.39 | 53.15 |
| TraesCS4D01G019100.1 | Wheat | nucleus | 50.13 | 53.02 |
| TraesCS4A01G354100.1 | Wheat | nucleus | 44.68 | 52.92 |
| TraesCSU01G075200.1 | Wheat | nucleus | 44.16 | 52.47 |
| HORVU0Hr1G014300.1 | Barley | nucleus | 42.86 | 50.0 |
| Zm00001d033407_P001 | Maize | nucleus | 46.23 | 50.0 |
| EER93684 | Sorghum | nucleus | 48.31 | 48.31 |
| TraesCS5B01G518800.1 | Wheat | nucleus | 38.7 | 47.3 |
| TraesCS5B01G518500.1 | Wheat | nucleus | 39.74 | 47.08 |
| Os12t0632600-00 | Rice | nucleus | 40.0 | 43.75 |
| HORVU4Hr1G003340.3 | Barley | nucleus | 46.75 | 38.88 |
| TraesCSU01G075100.1 | Wheat | nucleus | 30.91 | 35.21 |
| Os03t0725800-01 | Rice | nucleus | 26.23 | 28.13 |
| Os03t0229100-00 | Rice | plastid | 17.66 | 23.78 |
| Os03t0671000-00 | Rice | mitochondrion | 15.58 | 23.62 |
| Os01t0577300-00 | Rice | cytosol | 6.75 | 21.31 |
| Os08t0543700-00 | Rice | nucleus, peroxisome, plastid | 13.77 | 20.15 |
| Os10t0104300-00 | Rice | nucleus | 16.62 | 19.57 |
| Os09t0519100-00 | Rice | nucleus | 12.47 | 18.18 |
| Os01t0576100-00 | Rice | nucleus | 10.13 | 12.42 |
| Os01t0705700-01 | Rice | nucleus | 13.77 | 11.52 |
| Os10t0575000-01 | Rice | nucleus | 18.7 | 10.3 |
| Os04t0557800-00 | Rice | mitochondrion | 13.51 | 9.06 |
| Os04t0557200-01 | Rice | cytosol, nucleus, peroxisome | 12.73 | 8.77 |
| Os01t0235700-01 | Rice | nucleus | 13.77 | 8.59 |
| Os11t0258700-00 | Rice | mitochondrion | 10.13 | 8.07 |
| Os04t0557500-00 | Rice | mitochondrion, plasma membrane | 3.38 | 7.22 |
| Os07t0211500-00 | Rice | nucleus | 3.9 | 3.14 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | EntrezGene:4333691 | ProteinID:ABF98126.1 | EMBL:AK107190 |
| ProteinID:BAF12785.1 | ProteinID:BAS85692.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EMBL:HQ858862 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os03g0671800 |
| EnsemblPlants:Os03t0671800-01 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | UniProt:Q10FD6 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0000DB4349 | RefSeq:XP_015629952.1 | RefSeq:XP_015629953.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
basic helix-loop-helix protein 020Helix-loop-helix DNA-binding domain containing protein. (Os03t0671800-01)
Coordinates
chr3:-:26505145..26509491
Molecular Weight (calculated)
39731.5 Da
IEP (calculated)
7.345
GRAVY (calculated)
-0.395
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSSLFMEW AMETLQHLHP LPATPPPAGG GYAGDNATFP SLQALRESSV SQNGMAPPEP TAHEGHRASN SWSSGDTDSV SGGGGGAVME HDGWSTSPNS
101: VRCAAGGGGG GGGGGLWPVS WNFSSAMTQP CNDQATPSNP PTTTRARYGG GGVRYLPAAV SPSPSAQTRR ASSKGNGGGG SGSSSAAPYA QEHIIAERKR
201: REKINQRFIE LSTVIPGLKK MDKATILSDA VRYVKEMQEK LSELEQHQNG GVESAILLKK PCIATSSSDG GCPAASSAVA GSSSSGTARS SLPEIEAKIS
301: HGNVMVRIHG ENNGKGSLVR LLAAVEGLHL GITHTNVMPF SACTAIITIM AKVEDGVSVT AEDIVGKLNT VLQQNSRNSA RETKS
101: VRCAAGGGGG GGGGGLWPVS WNFSSAMTQP CNDQATPSNP PTTTRARYGG GGVRYLPAAV SPSPSAQTRR ASSKGNGGGG SGSSSAAPYA QEHIIAERKR
201: REKINQRFIE LSTVIPGLKK MDKATILSDA VRYVKEMQEK LSELEQHQNG GVESAILLKK PCIATSSSDG GCPAASSAVA GSSSSGTARS SLPEIEAKIS
301: HGNVMVRIHG ENNGKGSLVR LLAAVEGLHL GITHTNVMPF SACTAIITIM AKVEDGVSVT AEDIVGKLNT VLQQNSRNSA RETKS
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.