Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0577300-00 | Rice | cytosol | 35.03 | 90.16 |
| TraesCSU01G237100.1 | Wheat | nucleus | 42.36 | 36.24 |
| TraesCSU01G228400.1 | Wheat | nucleus | 42.36 | 36.24 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 41.72 | 32.19 |
| Os11t0258700-00 | Rice | mitochondrion | 43.31 | 28.16 |
| OQU82119 | Sorghum | nucleus | 44.27 | 25.46 |
| Os04t0557200-01 | Rice | cytosol, nucleus, peroxisome | 45.22 | 25.4 |
| Os04t0557800-00 | Rice | mitochondrion | 46.18 | 25.26 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 43.31 | 24.37 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 43.63 | 24.16 |
| HORVU2Hr1G096810.5 | Barley | nucleus | 42.68 | 23.89 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 42.68 | 23.51 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 41.4 | 23.34 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 42.36 | 23.21 |
| OQU81560 | Sorghum | nucleus | 43.31 | 23.09 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 41.08 | 22.87 |
| OQU82117 | Sorghum | nucleus | 42.68 | 22.71 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 42.04 | 22.56 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 40.76 | 22.54 |
| OQU82120 | Sorghum | nucleus | 41.72 | 22.28 |
| Zm00001d026147_P002 | Maize | nucleus | 43.63 | 22.24 |
| TraesCSU01G029400.1 | Wheat | nucleus | 40.45 | 22.2 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 41.08 | 21.9 |
| TraesCS2D01G406800.1 | Wheat | plastid | 31.21 | 21.08 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 36.94 | 20.83 |
| PGSC0003DMT400032140 | Potato | nucleus | 22.93 | 20.0 |
| Os09t0519100-00 | Rice | nucleus | 14.33 | 17.05 |
| Os08t0543700-00 | Rice | nucleus, peroxisome, plastid | 13.38 | 15.97 |
| GSMUA_Achr11P... | Banana | nucleus | 22.61 | 15.07 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 27.39 | 14.63 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 25.16 | 14.47 |
| GSMUA_Achr11P... | Banana | nucleus | 24.84 | 14.13 |
| VIT_02s0025g03450.t01 | Wine grape | nucleus | 28.03 | 14.01 |
| Os03t0229100-00 | Rice | plastid | 12.42 | 13.64 |
| GSMUA_Achr11P... | Banana | nucleus | 25.48 | 13.49 |
| Bra027653.1-P | Field mustard | nucleus | 23.89 | 12.58 |
| AT1G63650.1 | Thale cress | nucleus | 23.25 | 12.25 |
| KRH41187 | Soybean | nucleus | 24.52 | 12.22 |
| Bra027796.1-P | Field mustard | nucleus | 23.25 | 12.05 |
| Solyc08g081140.2.1 | Tomato | nucleus | 23.89 | 11.98 |
| Bra025508.1-P | Field mustard | nucleus | 23.89 | 11.92 |
| AT5G41315.2 | Thale cress | nucleus | 23.89 | 11.63 |
| Os10t0104300-00 | Rice | nucleus | 12.1 | 11.62 |
| KRH59908 | Soybean | nucleus | 23.25 | 11.57 |
| Os01t0705700-01 | Rice | nucleus | 16.56 | 11.3 |
| VIT_15s0046g02560.t01 | Wine grape | nucleus | 22.93 | 10.93 |
| Os12t0632600-00 | Rice | nucleus | 11.78 | 10.51 |
| Os03t0671800-01 | Rice | nucleus | 12.42 | 10.13 |
| KRH65046 | Soybean | nucleus | 20.7 | 10.05 |
| AT4G00480.2 | Thale cress | nucleus | 17.52 | 9.48 |
| Os03t0725800-01 | Rice | nucleus | 10.83 | 9.47 |
| KRH48144 | Soybean | nucleus | 19.43 | 9.38 |
| Bra000970.1-P | Field mustard | nucleus | 17.52 | 8.41 |
| Os01t0235700-01 | Rice | nucleus | 16.24 | 8.27 |
| Bra037343.1-P | Field mustard | cytosol | 17.52 | 7.74 |
| Os10t0575000-01 | Rice | nucleus | 17.2 | 7.73 |
| Os03t0671000-00 | Rice | mitochondrion | 3.82 | 4.72 |
| Os07t0211500-00 | Rice | nucleus | 5.41 | 3.56 |
| Os04t0557500-00 | Rice | mitochondrion, plasma membrane | 1.59 | 2.78 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:BAF05305.2 | ProteinID:BAS72831.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os01g0576100 | EnsemblPlants:Os01t0576100-00 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF94 | UniProt:Q0JLS3 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0001B6656E | InterPro:bHLH_dom | SEG:seg | : | : |
Description
basic helix-loop-helix protein 012Helix-loop-helix DNA-binding domain containing protein. (Os01t0576100-00)
Coordinates
chr1:+:22236858..22238067
Molecular Weight (calculated)
34610.5 Da
IEP (calculated)
7.074
GRAVY (calculated)
-0.349
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKLRLSIHY EPISSGTPSS PSSPLTKETG DANTVLIDDL FLAHSDAILA GGDQEDHQLG NDLGQQQAAT AMEIDDDMIY SLIRNWDNDS SSSWIELLDH
101: VVVSPASCFV PWKRTELDKQ AVAGGGEAAQ RLLKKAVGGG GAWMNRAAGS SIKNHVMSER RRWEKLNEMF LTLKSLVPSI DKVDKASSLA ETIAYLKELE
201: RRVQELESGK KVSRPAKRKP CSERIIGGGD AGAVKEHHHW VLSESQEGTP SNVRVIVMDK DELHLEVHCR WKELMMTRLF DAIKSLRLDV LSVQASAPNG
301: LLGLKIRAKV VSLT
101: VVVSPASCFV PWKRTELDKQ AVAGGGEAAQ RLLKKAVGGG GAWMNRAAGS SIKNHVMSER RRWEKLNEMF LTLKSLVPSI DKVDKASSLA ETIAYLKELE
201: RRVQELESGK KVSRPAKRKP CSERIIGGGD AGAVKEHHHW VLSESQEGTP SNVRVIVMDK DELHLEVHCR WKELMMTRLF DAIKSLRLDV LSVQASAPNG
301: LLGLKIRAKV VSLT
001: MATGQNRTTV PENLKKHLAV SVRNIQWSYG IFWSVSASQS GVLEWGDGYY NGDIKTRKTI QASEIKADQL GLRRSEQLSE LYESLSVAES SSSGVAAGSQ
101: VTRRASAAAL SPEDLADTEW YYLVCMSFVF NIGEGMPGRT FANGEPIWLC NAHTADSKVF SRSLLAKSAA VKTVVCFPFL GGVVEIGTTE HITEDMNVIQ
201: CVKTSFLEAP DPYATILPAR SDYHIDNVLD PQQILGDEIY APMFSTEPFP TASPSRTTNG FDQEHEQVAD DHDSFMTERI TGGASQVQSW QLMDDELSNC
301: VHQSLNSSDC VSQTFVEGAA GRVAYGARKS RVQRLGQIQE QQRNVKTLSF DPRNDDVHYQ SVISTIFKTN HQLILGPQFR NCDKQSSFTR WKKSSSSSSG
401: TATVTAPSQG MLKKIIFDVP RVHQKEKLML DSPEARDETG NHAVLEKKRR EKLNERFMTL RKIIPSINKI DKVSILDDTI EYLQELERRV QELESCREST
501: DTETRGTMTM KRKKPCDAGE RTSANCANNE TGNGKKVSVN NVGEAEPADT GFTGLTDNLR IGSFGNEVVI ELRCAWREGV LLEIMDVISD LHLDSHSVQS
601: STGDGLLCLT VNCKHKGSKI ATPGMIKEAL QRVAWIC
101: VTRRASAAAL SPEDLADTEW YYLVCMSFVF NIGEGMPGRT FANGEPIWLC NAHTADSKVF SRSLLAKSAA VKTVVCFPFL GGVVEIGTTE HITEDMNVIQ
201: CVKTSFLEAP DPYATILPAR SDYHIDNVLD PQQILGDEIY APMFSTEPFP TASPSRTTNG FDQEHEQVAD DHDSFMTERI TGGASQVQSW QLMDDELSNC
301: VHQSLNSSDC VSQTFVEGAA GRVAYGARKS RVQRLGQIQE QQRNVKTLSF DPRNDDVHYQ SVISTIFKTN HQLILGPQFR NCDKQSSFTR WKKSSSSSSG
401: TATVTAPSQG MLKKIIFDVP RVHQKEKLML DSPEARDETG NHAVLEKKRR EKLNERFMTL RKIIPSINKI DKVSILDDTI EYLQELERRV QELESCREST
501: DTETRGTMTM KRKKPCDAGE RTSANCANNE TGNGKKVSVN NVGEAEPADT GFTGLTDNLR IGSFGNEVVI ELRCAWREGV LLEIMDVISD LHLDSHSVQS
601: STGDGLLCLT VNCKHKGSKI ATPGMIKEAL QRVAWIC
Arabidopsis Description
GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.