Factsheet for Bra037343.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51155	Canola	mitochondrion, nucleus	72.43	95.02
CDY07214	Canola	mitochondrion, nucleus	69.76	91.51
Bra000970.1-P	Field mustard	nucleus	71.73	77.98
AT4G00480.2	Thale cress	nucleus	57.24	70.17
GSMUA_Achr11P...	Banana	nucleus	23.91	36.09
GSMUA_Achr8P11430_001	Banana	nucleus	25.18	32.78
Os04t0557500-00	Rice	mitochondrion, plasma membrane	8.3	32.78
GSMUA_Achr11P...	Banana	nucleus	24.61	31.7
GSMUA_Achr11P...	Banana	nucleus	25.04	30.02
Bra027796.1-P	Field mustard	nucleus	24.89	29.21
Bra027653.1-P	Field mustard	nucleus	24.47	29.19
Bra025508.1-P	Field mustard	nucleus	25.74	29.09
Os01t0577300-00	Rice	cytosol	4.92	28.69
TraesCSU01G116000.1	Wheat	nucleus	18.14	28.29
HORVU2Hr1G096810.5	Barley	nucleus	21.24	26.92
TraesCS2A01G409600.2	Wheat	nucleus, plastid	21.1	26.88
GSMUA_Achr5P20600_001	Banana	nucleus	22.22	26.87
TraesCS2B01G428000.1	Wheat	nucleus	21.52	26.7
TraesCS2D01G406900.1	Wheat	nucleus	21.24	26.63
TraesCS4B01G397400.1	Wheat	nucleus	20.96	26.42
TraesCSU01G029400.1	Wheat	nucleus	21.24	26.4
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	20.68	26.3
TraesCS2A01G409400.1	Wheat	nucleus	20.82	26.06
TraesCS5A01G489500.1	Wheat	nucleus	20.82	25.96
OQU82120	Sorghum	nucleus	21.24	25.68
Os04t0557800-00	Rice	mitochondrion	20.53	25.44
Zm00001d000236_P001	Maize	nucleus, plastid	19.69	25.13
TraesCS5A01G558500.1	Wheat	nucleus	20.53	24.96
TraesCS4B01G397800.1	Wheat	nucleus	17.86	24.9
OQU82117	Sorghum	nucleus	20.53	24.75
Bra037887.1-P	Field mustard	nucleus	17.02	24.35
TraesCS4D01G224600.1	Wheat	nucleus	18.99	24.24
TraesCS2D01G406800.1	Wheat	plastid	15.75	24.09
Zm00001d026147_P002	Maize	nucleus	20.82	24.03
OQU81560	Sorghum	nucleus	19.69	23.77
TraesCS2D01G575600.3	Wheat	nucleus, plastid	19.69	23.77
TraesCSU01G228400.1	Wheat	nucleus	10.27	19.89
TraesCSU01G237100.1	Wheat	nucleus	10.13	19.62
TraesCS4B01G397300.1	Wheat	nucleus	10.97	19.16
Bra024993.1-P	Field mustard	nucleus	9.85	18.57
Os01t0576100-00	Rice	nucleus	7.74	17.52
Bra017527.1-P	Field mustard	nucleus	5.49	17.26
Bra038458.1-P	Field mustard	nucleus	10.83	17.07
OQU82119	Sorghum	nucleus	13.08	17.03
Bra013264.1-P	Field mustard	nucleus	7.03	16.84
Bra012720.1-P	Field mustard	nucleus	10.69	16.67
Bra017520.1-P	Field mustard	nucleus	11.53	16.47
Bra039279.1-P	Field mustard	nucleus	10.55	16.34
Os11t0258700-00	Rice	mitochondrion	10.97	16.15
Bra004532.1-P	Field mustard	nucleus	10.97	16.05
Bra024992.1-P	Field mustard	nucleus	6.05	15.87
Bra017523.1-P	Field mustard	nucleus	11.25	15.78
Bra013128.1-P	Field mustard	nucleus	5.91	15.73
Bra010617.1-P	Field mustard	nucleus	7.17	15.27
Bra011790.1-P	Field mustard	nucleus	7.17	15.18
Bra024998.1-P	Field mustard	nucleus	11.67	14.31
Bra013263.1-P	Field mustard	nucleus	5.34	14.02
Bra033273.1-P	Field mustard	nucleus	11.11	13.53
Bra010178.1-P	Field mustard	nucleus	11.39	13.5
Bra039924.1-P	Field mustard	nucleus	5.63	12.78
Bra030210.1-P	Field mustard	nucleus	5.49	12.11
Bra039926.1-P	Field mustard	nucleus	4.78	11.72
Bra030208.1-P	Field mustard	nucleus	4.64	10.86
Bra039927.1-P	Field mustard	nucleus	4.78	10.76
Bra030207.1-P	Field mustard	nucleus	4.78	10.43

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	EnsemblPlantsGene:Bra037343	EnsemblPlants:Bra037343.1	EnsemblPlants:Bra037343.1-P	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR000008	InterPro:IPR011598	InterPro:IPR035892	InterPro:IPR036638	UniProt:M4F8D1	InterPro:MYC/MYB_N
PFAM:PF00168	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF38	SMART:SM00353
SUPFAM:SSF47459	SUPFAM:SSF49562	UniParc:UPI0002541AA7	InterPro:bHLH_dom	:	:

Description

AT4G00480 (E=4e-125) ATMYC1, myc1 | myc-related transcription factor (MYC1)

Coordinates

chrA09:+:964404..968671

Molecular Weight (calculated)

81168.9 Da

IEP (calculated)

6.784

GRAVY (calculated)

-0.463

Length

711 amino acids

Sequence
(BLAST)

001: MAGGVEAASG RSKSKNNLLR KQLAVALRSV QWSYAIFWSS SLTQHGVLEW EEGCYNGDIK KRKKSYEAAQ YKYALQRSNQ LRKLYLCMLE GDSNTTISTT
101: HDVDDYGDDE EHNCNSTTSM MLSPDDLSDE ECLPGRALVT GETIWLCNAQ YADNKLFSRS LLARTVVCFP YLGGVIELGV TELISEDHSL LQHIKSCLLE
201: TSKPDCASYT FSARRDSDDE KYQTKIKTSD GNSNSVLQGN HQIQSDEDVH YKRTVSTLLK YAADKDIPHL QPDLVSTNIE SSFLRWKQRE QPNSILFQEH
301: SNLQTLSQNV LRKILQDVPL MHSLDTKRTL PSKTFGLNQD DPWDTRKENE KFSVLKAMVP TVNQVITNKP ILCYICSVLE TKTLFGITLQ VDKEEILNNT
401: IKYLQELEGR VEELESCMGS VNFAERQRKS VNDSVLIEET SGNYDESTKI DGNSGETEQV TIVRDETHLR VKLKETEVVM EVRCSYRDYI VADIMETLSK
501: LHMDAFSVRS YTLNGFLTLN LKAKFRGAAV ASVGMIKREL RRVIGSPVYY VLLQCGTKEY RSKMSKGDND NALWNQKFVF DFPMYQWKKL THIKVRIMDK
601: ELFKDGGFVG ETIIHLGGII TEGRDRGYIE VKPAPYNVVL DDDTFKGELK LGFRFTAADK LHINKAWEVK IEGKNSEEPM ISPVLNLMKL PLLRFLIYCF
701: RKTTKYQLKD N

Best Arabidopsis Sequence Match ( AT4G00480.1 )
(BLAST)

001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF

Arabidopsis Description

ATMYC1Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JHC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.