Factsheet for Bra038458.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32242	Canola	nucleus	99.78	99.78
CDY34468	Canola	nucleus	98.0	98.0
AT4G16430.1	Thale cress	nucleus	90.24	87.15
Bra012720.1-P	Field mustard	nucleus	87.8	86.84
VIT_07s0141g01060.t01	Wine grape	nucleus	54.77	50.31
PGSC0003DMT400051672	Potato	nucleus	51.0	48.22
Solyc06g083980.1.1	Tomato	nucleus	50.33	47.59
KRH19522	Soybean	nucleus	50.55	45.06
KRH32144	Soybean	nucleus	49.22	44.05
Bra039279.1-P	Field mustard	nucleus	37.69	37.04
Bra004532.1-P	Field mustard	nucleus	37.03	34.36
TraesCS3B01G288700.1	Wheat	nucleus	33.7	34.31
Os01t0705700-01	Rice	nucleus	34.81	34.13
Bra017527.1-P	Field mustard	nucleus	16.85	33.63
TraesCS3A01G252900.1	Wheat	nucleus	33.48	32.9
Zm00001d043706_P001	Maize	nucleus	33.7	32.55
HORVU3Hr1G066390.1	Barley	nucleus	33.48	32.47
TraesCS3D01G253700.1	Wheat	nucleus	33.48	32.47
TraesCS3B01G284800.1	Wheat	nucleus	33.26	31.58
EES01345	Sorghum	nucleus	33.48	31.2
Bra033273.1-P	Field mustard	nucleus	39.02	30.14
Bra013263.1-P	Field mustard	nucleus	17.74	29.52
Bra024993.1-P	Field mustard	nucleus	23.06	27.59
Bra024992.1-P	Field mustard	nucleus	15.52	25.83
Bra017520.1-P	Field mustard	nucleus	25.72	23.29
Bra010178.1-P	Field mustard	nucleus	30.82	23.17
Bra017523.1-P	Field mustard	nucleus	25.28	22.49
Bra024998.1-P	Field mustard	nucleus	28.38	22.07
Bra013264.1-P	Field mustard	nucleus	12.42	18.86
Bra037887.1-P	Field mustard	nucleus	19.51	17.71
Bra013128.1-P	Field mustard	nucleus	10.42	17.6
Bra027796.1-P	Field mustard	nucleus	21.29	15.84
Bra027653.1-P	Field mustard	nucleus	20.84	15.77
Bra039924.1-P	Field mustard	nucleus	10.86	15.65
Bra010617.1-P	Field mustard	nucleus	11.53	15.57
Bra030210.1-P	Field mustard	nucleus	10.64	14.91
Bra039927.1-P	Field mustard	nucleus	10.42	14.87
Bra030208.1-P	Field mustard	nucleus	9.98	14.8
Bra030207.1-P	Field mustard	nucleus	10.64	14.72
Bra011790.1-P	Field mustard	nucleus	10.86	14.58
Bra025508.1-P	Field mustard	nucleus	20.18	14.47
Bra039926.1-P	Field mustard	nucleus	9.09	14.14
Bra000970.1-P	Field mustard	nucleus	17.29	11.93
Bra037343.1-P	Field mustard	cytosol	17.07	10.83

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra038458	EnsemblPlants:Bra038458.1	EnsemblPlants:Bra038458.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4FBJ2	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF53	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025446E0	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT4G16430 (E=4e-224) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA01:-:11097803..11099158

Molecular Weight (calculated)

50271.6 Da

IEP (calculated)

7.128

GRAVY (calculated)

-0.443

Length

451 amino acids

Sequence
(BLAST)

001: MGQKFWDNQE DRAMVESTIG SEACDFFISS ASSLTKLLPP PPTDPNLQQG LRHVVEGSDW DYAIFWLASN VNSSDGCVLI WGDGHCRVVK GNSGDEQDET
101: KRRVLSKLHL SFVGSDLVKQ GPLTDLDMFY LASLYFSFRC DSNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FKTVLSVPVN CGVVELGSLK
201: LIPEDKSVVE MVKSVFGGSD FVKTKEAPKI FGRQLSLGGS KPRSMSINFS PKVEDDTGFS LEAYEVGGSN QVYGKDEAAL YLTDEQRPRK RGRKPANGRE
301: EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLA DAITYITDMQ KKIRVYETEK QVMKRRESNQ ITPAEVDYQQ RQDDAVVRVS CPLENHPVSK
401: VIQVFKENEV TPHDANVAVT EEGVVHTFTL RPQGGCTAEQ LKDKLLTSLA Q

Best Arabidopsis Sequence Match ( AT4G16430.1 )
(BLAST)

001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ

Arabidopsis Description

BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.