Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038458.1-P | Field mustard | nucleus | 87.15 | 90.24 |
| CDY32242 | Canola | nucleus | 86.94 | 90.02 |
| CDY34468 | Canola | nucleus | 86.94 | 90.02 |
| CDX90525 | Canola | nucleus | 82.44 | 84.43 |
| Bra012720.1-P | Field mustard | nucleus | 82.23 | 84.21 |
| CDY09695 | Canola | nucleus | 76.66 | 73.51 |
| VIT_07s0141g01060.t01 | Wine grape | nucleus | 55.46 | 52.75 |
| PGSC0003DMT400051672 | Potato | nucleus | 50.75 | 49.69 |
| Solyc06g083980.1.1 | Tomato | nucleus | 50.11 | 49.06 |
| KRH19522 | Soybean | nucleus | 50.54 | 46.64 |
| KRH32144 | Soybean | nucleus | 49.46 | 45.83 |
| TraesCS3B01G288700.1 | Wheat | nucleus | 33.19 | 34.99 |
| Os01t0705700-01 | Rice | nucleus | 34.26 | 34.78 |
| TraesCS3A01G252900.1 | Wheat | nucleus | 33.19 | 33.77 |
| HORVU3Hr1G066390.1 | Barley | nucleus | 33.19 | 33.33 |
| TraesCS3D01G253700.1 | Wheat | nucleus | 33.19 | 33.33 |
| Zm00001d043706_P001 | Maize | nucleus | 32.76 | 32.76 |
| TraesCS3B01G284800.1 | Wheat | nucleus | 32.76 | 32.21 |
| AT1G01260.1 | Thale cress | nucleus | 39.83 | 31.53 |
| EES01345 | Sorghum | nucleus | 32.55 | 31.41 |
| AT2G46510.1 | Thale cress | nucleus | 36.19 | 29.86 |
| AT4G00870.1 | Thale cress | nucleus, plastid | 24.41 | 26.95 |
| AT5G46830.1 | Thale cress | nucleus | 25.27 | 23.09 |
| AT4G17880.1 | Thale cress | nucleus | 28.48 | 22.58 |
| AT1G32640.1 | Thale cress | nucleus | 29.34 | 21.99 |
| AT5G46760.1 | Thale cress | nucleus | 26.55 | 20.95 |
| AT4G09820.1 | Thale cress | nucleus | 21.63 | 19.5 |
| AT1G63650.1 | Thale cress | nucleus | 21.84 | 17.11 |
| AT2G22750.3 | Thale cress | nucleus | 11.78 | 16.52 |
| AT2G22760.1 | Thale cress | nucleus | 9.85 | 15.59 |
| AT2G22770.1 | Thale cress | nucleus | 10.49 | 15.31 |
| AT4G37850.1 | Thale cress | nucleus | 10.71 | 15.24 |
| AT5G41315.2 | Thale cress | nucleus | 20.77 | 15.04 |
| AT4G00480.2 | Thale cress | nucleus | 17.77 | 14.31 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:827337 | UniProt:A0A178V653 | ProteinID:AEE83747.1 | EMBL:AF251688 |
| EMBL:AF428368 | ArrayExpress:AT4G16430 | EnsemblPlantsGene:AT4G16430 | RefSeq:AT4G16430 | TAIR:AT4G16430 | RefSeq:AT4G16430-TAIR-G |
| EnsemblPlants:AT4G16430.1 | TAIR:AT4G16430.1 | EMBL:AY057626 | Unigene:At.4413 | EMBL:BT002301 | ProteinID:CAB10419.1 |
| ProteinID:CAB78685.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010629 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| InterPro:MYC/MYB_N | RefSeq:NP_193376.1 | UniProt:O23487 | ProteinID:OAP00492.1 | PFAM:PF00010 | PFAM:PF14215 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF53 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000AC3F2 |
| InterPro:bHLH_dom | : | : | : | : | : |
Description
BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
Coordinates
chr4:+:9267260..9269178
Molecular Weight (calculated)
52236.6 Da
IEP (calculated)
6.849
GRAVY (calculated)
-0.505
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.