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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra012720.1-P Field mustard nucleus 97.59 97.59
CDY32242 Canola nucleus 87.28 88.25
CDY34468 Canola nucleus 86.4 87.36
CDY09695 Canola nucleus 88.82 83.16
AT4G16430.1 Thale cress nucleus 84.43 82.44
VIT_07s0141g01060.t01 Wine grape nucleus 51.54 47.86
PGSC0003DMT400051672 Potato nucleus 48.25 46.12
Solyc06g083980.1.1 Tomato nucleus 47.81 45.7
KRH19522 Soybean nucleus 48.9 44.07
KRH32144 Soybean nucleus 48.46 43.85
CDY66312 Canola nucleus 37.06 36.9
CDX77696 Canola nucleus 9.65 36.67
CDY27319 Canola nucleus 35.53 36.57
CDX80023 Canola nucleus 37.72 35.32
CDY56874 Canola nucleus 37.72 35.03
TraesCS3B01G288700.1 Wheat nucleus 32.46 33.41
CDY70013 Canola nucleus 18.42 33.33
Os01t0705700-01 Rice nucleus 33.55 33.26
TraesCS3A01G252900.1 Wheat nucleus 32.46 32.24
HORVU3Hr1G066390.1 Barley nucleus 32.46 31.83
TraesCS3D01G253700.1 Wheat nucleus 32.46 31.83
Zm00001d043706_P001 Maize nucleus 31.8 31.05
TraesCS3B01G284800.1 Wheat nucleus 32.02 30.74
CDX90021 Canola nucleus 35.75 30.19
EES01345 Sorghum nucleus 31.58 29.75
CDY70012 Canola nucleus 17.32 29.59
CDY58502 Canola nucleus 26.32 26.73
CDX77688 Canola nucleus 26.1 26.33
CDY33482 Canola nucleus 15.13 25.46
CDX77699 Canola nucleus 14.91 25.09
CDX73261 Canola nucleus 24.12 24.83
CDY26910 Canola nucleus 24.12 24.83
CDY45357 Canola cytosol, golgi, nucleus 10.09 24.21
CDY03185 Canola nucleus 24.78 23.89
CDY44507 Canola nucleus 30.48 23.72
CDY03183 Canola nucleus 26.32 23.58
CDY03195 Canola nucleus 28.07 23.49
CDY59973 Canola nucleus 26.1 23.38
CDX77694 Canola nucleus 12.94 23.32
CDX78808 Canola nucleus 29.61 23.32
CDX84081 Canola nucleus 26.54 22.87
CDY35179 Canola nucleus 28.07 22.78
CDY35183 Canola nucleus 25.0 22.49
CDX86891 Canola nucleus 20.39 17.85
CDX99505 Canola nucleus 19.96 17.47
CDX89627 Canola nucleus 9.87 16.85
CDX93135 Canola nucleus 9.87 16.85
CDY13737 Canola nucleus 10.31 15.93
CDY39747 Canola nucleus 19.52 15.92
CDX76899 Canola nucleus 11.18 15.79
CDY25513 Canola nucleus 19.96 15.77
CDY58950 Canola nucleus 19.74 15.6
CDY34367 Canola nucleus 20.18 15.44
CDY08314 Canola nucleus 20.18 15.21
CDX89513 Canola nucleus 10.75 15.08
CDY49678 Canola nucleus 10.96 14.97
CDY72199 Canola nucleus 10.96 14.97
CDY51155 Canola mitochondrion, nucleus 17.76 14.94
CDY07214 Canola mitochondrion, nucleus 17.76 14.94
CDY52591 Canola nucleus 10.31 14.92
CDY25628 Canola nucleus 10.53 14.91
CDX91907 Canola nucleus 17.54 14.71
CDX89511 Canola nucleus 10.31 14.64
CDX89512 Canola nucleus 9.43 14.53
CDY25630 Canola nucleus 10.31 14.46
CDY25629 Canola nucleus 9.43 14.33
CDY70506 Canola nucleus 16.67 14.23
CDX69336 Canola nucleus 10.53 14.2
CDY13735 Canola nucleus 8.99 14.19
CDY52593 Canola nucleus 8.77 14.04
CDX75679 Canola nucleus 10.31 13.99
CDY72121 Canola nucleus 8.11 12.01
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10GO:A0A078DN22EnsemblPlants:CDX90525ProteinID:CDX90525ProteinID:CDX90525.1
ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00151152001
InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:MYC/MYB_NPFAM:PF00010PFAM:PF14215
PFscan:PS50888PANTHER:PTHR11514PANTHER:PTHR11514:SF53SMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EDD610
InterPro:bHLH_domSEG:seg::::
Description
BnaA03g42560D
Coordinates
chrLK031863:-:700358..701728
Molecular Weight (calculated)
51139.5 Da
IEP (calculated)
6.523
GRAVY (calculated)
-0.487
Length
456 amino acids
Sequence
(BLAST)
001: MNVTGESMVG QKFWESQEDR AMVESAIGTE ACDFFISSNT SLPKLLPPPP PTDPNLQQGL RHVVEGSDWD YAVFWLASNV NSSDGCVLIW GDGYYRATQK
101: GNSSDKEEDE TKRRVLRKLH LSFTGSDEDH RLMKSGGLLS DLDMFYLASL YFYFRCDSTK YGPAGTYVSG KPLWAADLPS CLSYYRVRSF LARSAGFKTV
201: LSVPVNCGVV ELGSLKLIPE DKSVVEMVKS VFGGSDFVQA PKIFGRQLSK PRSMSINFSP KMEDESGFSL DAYEVGGSNQ VEAALYLTDE QKPRKRGRKP
301: ANGREEALNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLADAITY ITDMQKKIRV YETEKQVMKR RESSQITPGD VDYQQRHDDA VVRVSCPLET
401: HPVSKVVQMF RENEVTPHDT NVAVTEEGVV HTFTVRPQSG CTAEELKDKL LASLSQ
Best Arabidopsis Sequence Match ( AT4G16430.1 )
(BLAST)
001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
Arabidopsis Description
BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.