Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25630 | Canola | nucleus | 96.31 | 96.31 |
| CDY52591 | Canola | nucleus | 86.15 | 88.89 |
| AT2G22770.1 | Thale cress | nucleus | 80.31 | 81.56 |
| CDY13735 | Canola | nucleus | 40.31 | 45.33 |
| CDY52593 | Canola | nucleus | 39.08 | 44.56 |
| CDX89512 | Canola | nucleus | 39.08 | 42.91 |
| VIT_07s0205g00170.t01 | Wine grape | cytosol | 16.31 | 42.06 |
| CDY25629 | Canola | nucleus | 38.15 | 41.33 |
| CDY13737 | Canola | nucleus | 28.92 | 31.86 |
| KRH28295 | Soybean | nucleus | 29.85 | 30.99 |
| CDX69336 | Canola | nucleus | 32.0 | 30.77 |
| CDX75679 | Canola | nucleus | 31.08 | 30.06 |
| CDX89627 | Canola | nucleus | 24.31 | 29.59 |
| CDX93135 | Canola | nucleus | 24.0 | 29.21 |
| CDX76899 | Canola | nucleus | 28.92 | 29.1 |
| CDY49678 | Canola | nucleus | 29.54 | 28.74 |
| CDY72199 | Canola | nucleus | 29.23 | 28.44 |
| KRH28296 | Soybean | nucleus | 30.46 | 28.37 |
| KRH58186 | Soybean | nucleus | 31.08 | 27.98 |
| KRH04348 | Soybean | nucleus | 31.38 | 27.35 |
| KRH77192 | Soybean | nucleus | 28.62 | 27.27 |
| KRH77195 | Soybean | nucleus | 30.77 | 27.17 |
| CDY25628 | Canola | nucleus | 26.46 | 26.71 |
| CDX89511 | Canola | nucleus | 26.15 | 26.48 |
| KRH58189 | Soybean | nucleus | 30.77 | 26.18 |
| KRH04346 | Soybean | nucleus | 28.62 | 25.07 |
| CDX77696 | Canola | nucleus | 8.92 | 24.17 |
| CDX77699 | Canola | nucleus | 15.08 | 18.08 |
| CDY33482 | Canola | nucleus | 15.08 | 18.08 |
| CDY70013 | Canola | nucleus | 12.31 | 15.87 |
| CDX73261 | Canola | nucleus | 17.85 | 13.09 |
| CDY26910 | Canola | nucleus | 17.85 | 13.09 |
| CDY72121 | Canola | nucleus | 12.31 | 12.99 |
| CDX77688 | Canola | nucleus | 16.62 | 11.95 |
| CDY58502 | Canola | nucleus | 16.0 | 11.58 |
| CDX84081 | Canola | nucleus | 18.46 | 11.34 |
| CDY34468 | Canola | nucleus | 15.69 | 11.31 |
| CDY27319 | Canola | nucleus | 15.38 | 11.29 |
| CDY66312 | Canola | nucleus | 15.69 | 11.14 |
| CDY32242 | Canola | nucleus | 15.08 | 10.86 |
| CDX90525 | Canola | nucleus | 15.08 | 10.75 |
| CDY56874 | Canola | nucleus | 15.69 | 10.39 |
| CDX80023 | Canola | nucleus | 15.38 | 10.27 |
| CDX86891 | Canola | nucleus | 16.0 | 9.98 |
| CDX99505 | Canola | nucleus | 16.0 | 9.98 |
| CDX78808 | Canola | nucleus | 17.54 | 9.84 |
| CDY44507 | Canola | nucleus | 17.54 | 9.73 |
| CDY03195 | Canola | nucleus | 16.31 | 9.72 |
| CDY03185 | Canola | nucleus | 13.85 | 9.51 |
| CDY35179 | Canola | nucleus | 16.31 | 9.43 |
| CDY09695 | Canola | nucleus | 13.85 | 9.24 |
| CDY35183 | Canola | nucleus | 14.15 | 9.07 |
| CDY59973 | Canola | nucleus | 13.54 | 8.64 |
| CDY03183 | Canola | nucleus | 13.54 | 8.64 |
| CDY39747 | Canola | nucleus | 14.46 | 8.41 |
| CDY58950 | Canola | nucleus | 14.77 | 8.32 |
| CDX90021 | Canola | nucleus | 13.54 | 8.15 |
| CDY25513 | Canola | nucleus | 14.15 | 7.97 |
| CDY34367 | Canola | nucleus | 14.15 | 7.72 |
| CDY08314 | Canola | nucleus | 13.85 | 7.44 |
| CDY07214 | Canola | mitochondrion, nucleus | 11.08 | 6.64 |
| CDX91907 | Canola | nucleus | 11.08 | 6.62 |
| CDY70506 | Canola | nucleus | 10.77 | 6.55 |
| CDY51155 | Canola | mitochondrion, nucleus | 10.46 | 6.27 |
| CDX77694 | Canola | nucleus | 3.08 | 3.95 |
| CDY70012 | Canola | nucleus | 1.85 | 2.25 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 1.23 | 2.11 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078DQR5 | EnsemblPlants:CDX89513 | ProteinID:CDX89513 |
| ProteinID:CDX89513.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00149794001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF48 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC11F7 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g35320D
Coordinates
chrLK031859:+:641644..643369
Molecular Weight (calculated)
36122.1 Da
IEP (calculated)
7.024
GRAVY (calculated)
-0.479
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSSFTDLM IDTDEYLVDD WEQDFPVIPA ETTDYQSTKP GSGSEYGSGL SLIPENRPTK QMKVNSTSSS SPSSSSSSCG SLTAAQVISF GSQDPKMNVV
101: EASFNFSSQA NMEPNVRSKR KECGNNGGKR EPHLLKEHVL AERKRRQKLN ERLIALSALL PGLKKADKAS VLEDAIKHLK QLQERVKKLE EERVGTKKMD
201: QSVILVKRSQ VYMDDDSSSY SSTCSAASPP SSSLDEVSIL KQTMPMIEAR VSDRDLLIRI HCEKNKGCLV KILNSLEKFH LEVVNSFTLP FGNSTLVIII
301: LTKMDNKFSR PIEDVVKNIR LALAE
101: EASFNFSSQA NMEPNVRSKR KECGNNGGKR EPHLLKEHVL AERKRRQKLN ERLIALSALL PGLKKADKAS VLEDAIKHLK QLQERVKKLE EERVGTKKMD
201: QSVILVKRSQ VYMDDDSSSY SSTCSAASPP SSSLDEVSIL KQTMPMIEAR VSDRDLLIRI HCEKNKGCLV KILNSLEKFH LEVVNSFTLP FGNSTLVIII
301: LTKMDNKFSR PIEDVVKNIR LALAE
001: MDDSSFMDLM IDTDEYLIDD WESDFPICGE TNTNPGSESG SGTGFELLAE RPTKQMKTNN NMNSTSSSPS SSSSSGSRTS QVISFGSPDT KTNPVETSLN
101: FSNQVSMDQK VGSKRKDCVN NGGRREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK TDKATVLEDA IKHLKQLQER VKKLEEERVV TKKMDQSIIL
201: VKRSQVYLDD DSSSYSSTCS AASPLSSSSD EVSIFKQTMP MIEARVSDRD LLIRVHCEKN KGCMIKILSS LEKFRLEVVN SFTLPFGNST LVITILTKMD
301: NKFSRPVEEV VKNIRVALAE
101: FSNQVSMDQK VGSKRKDCVN NGGRREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK TDKATVLEDA IKHLKQLQER VKKLEEERVV TKKMDQSIIL
201: VKRSQVYLDD DSSSYSSTCS AASPLSSSSD EVSIFKQTMP MIEARVSDRD LLIRVHCEKN KGCMIKILSS LEKFRLEVVN SFTLPFGNST LVITILTKMD
301: NKFSRPVEEV VKNIRVALAE
Arabidopsis Description
NAI1NAI1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWP9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.