CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91907	Canola	nucleus	94.57	92.83
Bra000970.1-P	Field mustard	nucleus	95.69	78.13
CDY07214	Canola	mitochondrion, nucleus	78.28	77.12
CDY51155	Canola	mitochondrion, nucleus	77.15	76.01
AT4G00480.2	Thale cress	nucleus	76.03	70.0
CDY45357	Canola	cytosol, golgi, nucleus	17.04	47.89
GSMUA_Achr11P...	Banana	nucleus	32.58	36.94
GSMUA_Achr8P11430_001	Banana	nucleus	35.02	34.25
GSMUA_Achr11P...	Banana	nucleus	35.39	34.24
CDY39747	Canola	nucleus	35.77	34.17
CDY58950	Canola	nucleus	35.21	32.58
CDY25513	Canola	nucleus	34.46	31.89
GSMUA_Achr11P...	Banana	nucleus	35.02	31.53
CDY08314	Canola	nucleus	35.21	31.07
CDY34367	Canola	nucleus	34.64	31.04
GSMUA_Achr5P20600_001	Banana	nucleus	31.65	28.74
CDY72121	Canola	nucleus	16.29	28.25
CDX86891	Canola	nucleus	26.4	27.06
CDX99505	Canola	nucleus	26.4	27.06
CDX77694	Canola	nucleus	11.98	25.3
CDX77696	Canola	nucleus	4.49	20.0
CDY03185	Canola	nucleus	17.23	19.45
CDX77688	Canola	nucleus	16.29	19.25
CDY58502	Canola	nucleus	16.1	19.15
CDY70012	Canola	nucleus	9.36	18.73
CDY03183	Canola	nucleus	17.79	18.66
CDY59973	Canola	nucleus	17.79	18.66
CDY66312	Canola	nucleus	15.92	18.56
CDY35183	Canola	nucleus	17.42	18.34
CDY27319	Canola	nucleus	15.17	18.28
CDX73261	Canola	nucleus	14.98	18.06
CDY26910	Canola	nucleus	14.98	18.06
CDY56874	Canola	nucleus	16.29	17.72
CDX80023	Canola	nucleus	16.1	17.66
CDY34468	Canola	nucleus	14.23	16.85
CDY32242	Canola	nucleus	14.23	16.85
CDY03195	Canola	nucleus	17.04	16.7
CDX90525	Canola	nucleus	14.23	16.67
CDX78808	Canola	nucleus	17.79	16.41
CDX69336	Canola	nucleus	10.3	16.27
CDX77699	Canola	nucleus	8.24	16.24
CDY44507	Canola	nucleus	17.79	16.21
CDY35179	Canola	nucleus	17.04	16.19
CDX75679	Canola	nucleus	10.11	16.07
CDY49678	Canola	nucleus	9.93	15.87
CDY72199	Canola	nucleus	9.93	15.87
CDY33482	Canola	nucleus	7.87	15.5
CDX90021	Canola	nucleus	15.17	15.0
CDX89627	Canola	nucleus	7.49	14.98
CDX93135	Canola	nucleus	7.49	14.98
CDX84081	Canola	nucleus	14.79	14.93
CDX76899	Canola	nucleus	8.8	14.55
CDY09695	Canola	nucleus	12.73	13.96
CDY25628	Canola	nucleus	8.24	13.66
CDY13737	Canola	nucleus	7.49	13.56
CDX89512	Canola	nucleus	7.49	13.51
CDY13735	Canola	nucleus	7.3	13.49
CDX89511	Canola	nucleus	8.05	13.4
CDY52593	Canola	nucleus	6.74	12.63
CDY25629	Canola	nucleus	6.93	12.33
CDY70013	Canola	nucleus	5.43	11.51
CDY52591	Canola	nucleus	6.37	10.79
CDX89513	Canola	nucleus	6.55	10.77
CDY25630	Canola	nucleus	6.37	10.46

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078JYE6	UniProt:A0A078JYE6	EnsemblPlants:CDY70506	ProteinID:CDY70506
ProteinID:CDY70506.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00003923001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF14215
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF38	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EF3EE0
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaCnng68660DBnaCnng68660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYE6]

Coordinates

chrLK042325:+:283..3085

Molecular Weight (calculated)

60895.7 Da

IEP (calculated)

8.243

GRAVY (calculated)

-0.557

Length

534 amino acids

Sequence
(BLAST)

001: MSLTMDDGAE APRGRRIRRN SLLSKQLAVA VKSVRWSYAI FWSSSPTQSG VLEWGEGCYN GEMKKRKKRY EVHYKHVLQR SNQLRELYLC MREGDSTNTI
101: SATDDGYHNC NSKTSMLLSP DDLSDEEWYY VVSMSYVFSP SQCLPGRALA TGETIWLCNA QYADSKLFSR SLLARTVVCF PYLGGVIELG VTELISEDPN
201: LLQHIKSCLL ETLKPDCPSN NFSAHQDNDD DKKNQMKIKI KNQQIQFGIS DLMLDEDLHY KRTVSTLLKY AADKSKMKNS HHRQPELVSS NSGSSFLRWK
301: QPDSNLLLKY SNSQNVLRKI LHDVPLMHSV DTKKMSTNKM FGLNQDDPSV KRKENEKFNV LRAMVPTVNE VDKEEILNNT IKYLQELEER VEELESCMGS
401: VNFVGKQRKT KKSLNDSVLI EETSGNYDDS TKIDGNSGET DQVTVLRDET HLRVKLKETE VVMEVRCSYR DYIVADIMET LSKLHMDAFS VRSHTLNGFL
501: TLNLKAKLRG AAVASVGMIK RELRRVIGES TRIT

Best Arabidopsis Sequence Match ( AT4G00480.1 )
(BLAST)

001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF

Arabidopsis Description

ATMYC1Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JHC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.