CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35179	Canola	nucleus	98.53	95.55
Bra017527.1-P	Field mustard	nucleus	38.35	92.48
CDY58502	Canola	nucleus	69.36	84.19
CDX77688	Canola	nucleus	69.54	83.85
AT5G46760.1	Thale cress	nucleus	78.35	72.13
CDX78808	Canola	nucleus	66.61	62.69
CDY44507	Canola	nucleus	66.79	62.12
CDX73261	Canola	nucleus	43.49	53.5
CDY26910	Canola	nucleus	43.3	53.27
Solyc08g005050.2.1	Tomato	nucleus	44.04	51.72
VIT_02s0012g01320.t01	Wine grape	nucleus	61.65	50.68
PGSC0003DMT400002963	Potato	nucleus	55.23	50.33
KRH75613	Soybean	nucleus	58.35	49.92
CDX84081	Canola	nucleus	48.07	49.53
KRH45440	Soybean	nucleus	58.17	48.47
KRH74418	Soybean	nucleus	56.7	48.13
Solyc08g076930.1.1	Tomato	nucleus	58.72	46.44
PGSC0003DMT400045204	Potato	nucleus	58.53	45.97
CDX77696	Canola	nucleus	10.09	45.83
CDY03185	Canola	nucleus	38.17	43.97
KRH39540	Soybean	nucleus	58.72	43.78
CDY59973	Canola	nucleus	39.45	42.24
CDY35183	Canola	nucleus	39.27	42.21
CDY03183	Canola	nucleus	39.27	42.04
CDX77699	Canola	nucleus	20.18	40.59
CDY33482	Canola	nucleus	20.18	40.59
CDX77694	Canola	nucleus	18.17	39.13
CDY70013	Canola	nucleus	15.78	34.13
CDY27319	Canola	nucleus	27.71	34.09
CDY66312	Canola	nucleus	27.34	32.53
CDY56874	Canola	nucleus	27.71	30.75
CDX80023	Canola	nucleus	27.34	30.6
CDX90021	Canola	nucleus	28.81	29.07
CDY32242	Canola	nucleus	23.67	28.6
CDY34468	Canola	nucleus	23.67	28.6
CDX90525	Canola	nucleus	23.49	28.07
CDY45357	Canola	cytosol, golgi, nucleus	9.54	27.37
CDY70012	Canola	nucleus	12.48	25.47
CDY09695	Canola	nucleus	21.65	24.23
CDX86891	Canola	nucleus	20.92	21.88
CDX99505	Canola	nucleus	20.92	21.88
CDX76899	Canola	nucleus	12.66	21.36
CDY13737	Canola	nucleus	11.56	21.36
CDX89627	Canola	nucleus	10.46	21.35
CDX93135	Canola	nucleus	10.46	21.35
CDY25628	Canola	nucleus	11.93	20.19
CDY49678	Canola	nucleus	12.29	20.06
CDY72199	Canola	nucleus	12.11	19.76
CDX75679	Canola	nucleus	12.11	19.64
CDX89511	Canola	nucleus	11.56	19.63
CDY39747	Canola	nucleus	19.82	19.32
CDY58950	Canola	nucleus	20.18	19.06
CDX69336	Canola	nucleus	11.74	18.93
CDY25513	Canola	nucleus	19.82	18.72
CDY34367	Canola	nucleus	19.45	17.79
CDY08314	Canola	nucleus	19.63	17.69
CDX89512	Canola	nucleus	9.36	17.23
CDY70506	Canola	nucleus	16.7	17.04
CDY07214	Canola	mitochondrion, nucleus	16.88	16.97
CDY72121	Canola	nucleus	9.54	16.88
CDY13735	Canola	nucleus	8.81	16.61
CDY51155	Canola	mitochondrion, nucleus	16.51	16.61
CDX91907	Canola	nucleus	16.51	16.54
CDY52591	Canola	nucleus	9.54	16.51
CDY52593	Canola	nucleus	8.62	16.49
CDY25629	Canola	nucleus	8.99	16.33
CDX89513	Canola	nucleus	9.72	16.31
CDY25630	Canola	nucleus	9.36	15.69

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078EMG4	EnsemblPlants:CDY03195	ProteinID:CDY03195	ProteinID:CDY03195.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00115684001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEB1A0
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaC09g19610D

Coordinates

chrLK031941:-:591946..593628

Molecular Weight (calculated)

59906.7 Da

IEP (calculated)

4.640

GRAVY (calculated)

-0.610

Length

545 amino acids

Sequence
(BLAST)

001: MDDHRNRVSL SPPDAHMSNY FLNQSTATDD DNASASMEAF IGTNHWSQQP SLPPPPSLSQ FNEDTLQQRL QTLIESAGER WTYAIFWQIS HDFDSPAGES
101: TVILGWGDGY YRGEEDKEKK KKQSSSSNPA EQEHRKRVIR ELNSLIAGGA GVSDEANDEE VTDTEWFFLV SMTQSFVNGV GLPGESFLNS RVIWLSGSGA
201: LTGSGCERAR QGEVYGLQTI VCIAAENGVV ELGSSEVISQ SSDLMDKVNG LFNGNGGGEA SSWGFNLNPD QGENDPSLWL SEPNITGIEP VQEAPAIENA
301: ADLNFSSSGL NQNGNFKQGS SSNKKRSPVS KDEEMLSFST VVRSAAKSVD SDHSDIEASV VKEAIIVEPE KKPRKRGRKP ANGREEPLNH VEAERQRREK
401: LNQRFYSLRA VVPNVSKMDK ASLLGDAISY INELKTKLQQ AETDKEEVQK QLDGMSKEGG GSVEMEIDVK IIGWDVMIRV QCGKKNHPGA RFMEALKELD
501: LEVNHASLSV VNDLMIQQAT VKMGSQFFNH DQLKAALMLK VGEDS

Best Arabidopsis Sequence Match ( AT5G46760.1 )
(BLAST)

001: MNGTTSSINF LTSDDDASAA AMEAFIGTNH HSSLFPPPPQ QPPQPQFNED TLQQRLQALI ESAGENWTYA IFWQISHDFD SSTGDNTVIL GWGDGYYKGE
101: EDKEKKKNNT NTAEQEHRKR VIRELNSLIS GGIGVSDESN DEEVTDTEWF FLVSMTQSFV NGVGLPGESF LNSRVIWLSG SGALTGSGCE RAGQGQIYGL
201: KTMVCIATQN GVVELGSSEV ISQSSDLMHK VNNLFNFNNG GGNNGVEASS WGFNLNPDQG ENDPALWISE PTNTGIESPA RVNNGNNSNS NSKSDSHQIS
301: KLEKNDISSV ENQNRQSSCL VEKDLTFQGG LLKSNETLSF CGNESSKKRT SVSKGSNNDE GMLSFSTVVR SAANDSDHSD LEASVVKEAI VVEPPEKKPR
401: KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL KSKLQQAESD KEEIQKKLDG MSKEGNNGKG CGSRAKERKS
501: SNQDSTASSI EMEIDVKIIG WDVMIRVQCG KKDHPGARFM EALKELDLEV NHASLSVVND LMIQQATVKM GSQFFNHDQL KVALMTKVGE NY

Arabidopsis Description

MYC3Transcription factor MYC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.