Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039927.1-P | Field mustard | nucleus | 97.14 | 96.84 |
| CDY25630 | Canola | nucleus | 90.48 | 87.69 |
| CDX89513 | Canola | nucleus | 88.89 | 86.15 |
| AT2G22770.1 | Thale cress | nucleus | 82.86 | 81.56 |
| CDY13735 | Canola | nucleus | 39.68 | 43.25 |
| CDY52593 | Canola | nucleus | 39.05 | 43.16 |
| VIT_07s0205g00170.t01 | Wine grape | cytosol | 16.51 | 41.27 |
| CDX89512 | Canola | nucleus | 37.78 | 40.2 |
| CDY25629 | Canola | nucleus | 37.46 | 39.33 |
| CDY13737 | Canola | nucleus | 29.52 | 31.53 |
| CDX69336 | Canola | nucleus | 33.02 | 30.77 |
| CDX89627 | Canola | nucleus | 26.03 | 30.71 |
| KRH28295 | Soybean | nucleus | 30.16 | 30.35 |
| CDX93135 | Canola | nucleus | 25.71 | 30.34 |
| CDX75679 | Canola | nucleus | 32.06 | 30.06 |
| CDY49678 | Canola | nucleus | 31.11 | 29.34 |
| CDX76899 | Canola | nucleus | 29.84 | 29.1 |
| CDY72199 | Canola | nucleus | 30.79 | 29.04 |
| KRH28296 | Soybean | nucleus | 31.43 | 28.37 |
| KRH58186 | Soybean | nucleus | 31.75 | 27.7 |
| CDY25628 | Canola | nucleus | 28.25 | 27.64 |
| KRH04348 | Soybean | nucleus | 32.38 | 27.35 |
| KRH77192 | Soybean | nucleus | 29.21 | 26.98 |
| CDX89511 | Canola | nucleus | 27.3 | 26.79 |
| KRH77195 | Soybean | nucleus | 31.11 | 26.63 |
| KRH58189 | Soybean | nucleus | 31.11 | 25.65 |
| KRH04346 | Soybean | nucleus | 28.57 | 24.26 |
| CDX77696 | Canola | nucleus | 8.89 | 23.33 |
| CDX77699 | Canola | nucleus | 14.6 | 16.97 |
| CDY33482 | Canola | nucleus | 14.6 | 16.97 |
| CDY70013 | Canola | nucleus | 12.38 | 15.48 |
| CDY26910 | Canola | nucleus | 18.1 | 12.87 |
| CDX73261 | Canola | nucleus | 18.1 | 12.87 |
| CDY72121 | Canola | nucleus | 12.38 | 12.66 |
| CDY27319 | Canola | nucleus | 16.19 | 11.51 |
| CDX77688 | Canola | nucleus | 16.51 | 11.5 |
| CDX84081 | Canola | nucleus | 18.73 | 11.15 |
| CDY58502 | Canola | nucleus | 15.87 | 11.14 |
| CDY66312 | Canola | nucleus | 15.87 | 10.92 |
| CDY34468 | Canola | nucleus | 15.56 | 10.86 |
| CDY32242 | Canola | nucleus | 14.92 | 10.42 |
| CDX90525 | Canola | nucleus | 14.92 | 10.31 |
| CDX86891 | Canola | nucleus | 16.83 | 10.17 |
| CDX80023 | Canola | nucleus | 15.56 | 10.06 |
| CDX99505 | Canola | nucleus | 16.51 | 9.98 |
| CDY56874 | Canola | nucleus | 15.56 | 9.98 |
| CDX78808 | Canola | nucleus | 17.78 | 9.67 |
| CDY44507 | Canola | nucleus | 17.78 | 9.56 |
| CDY03195 | Canola | nucleus | 16.51 | 9.54 |
| CDY03185 | Canola | nucleus | 13.97 | 9.3 |
| CDY35179 | Canola | nucleus | 16.51 | 9.25 |
| CDY35183 | Canola | nucleus | 14.29 | 8.88 |
| CDY09695 | Canola | nucleus | 13.65 | 8.83 |
| CDY59973 | Canola | nucleus | 13.97 | 8.64 |
| CDY03183 | Canola | nucleus | 13.65 | 8.45 |
| CDY39747 | Canola | nucleus | 14.92 | 8.41 |
| CDY58950 | Canola | nucleus | 14.92 | 8.15 |
| CDX90021 | Canola | nucleus | 13.65 | 7.96 |
| CDY25513 | Canola | nucleus | 13.97 | 7.63 |
| CDY34367 | Canola | nucleus | 13.97 | 7.38 |
| CDY08314 | Canola | nucleus | 13.65 | 7.11 |
| CDY07214 | Canola | mitochondrion, nucleus | 11.43 | 6.64 |
| CDX91907 | Canola | nucleus | 11.11 | 6.43 |
| CDY70506 | Canola | nucleus | 10.79 | 6.37 |
| CDY51155 | Canola | mitochondrion, nucleus | 10.79 | 6.27 |
| CDX77694 | Canola | nucleus | 3.17 | 3.95 |
| CDY70012 | Canola | nucleus | 1.9 | 2.25 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 0.95 | 1.58 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078IRX0 | UniProt:A0A078IRX0 | EnsemblPlants:CDY52591 |
| ProteinID:CDY52591 | ProteinID:CDY52591.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00007363001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF75 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EBBF5C |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaC08g49160DBnaC08g49160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRX0]
Coordinates
chrLK033106:-:45299..47114
Molecular Weight (calculated)
35148.1 Da
IEP (calculated)
7.505
GRAVY (calculated)
-0.466
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSSFTDLM LDTDEYLIDD WESDFPVVPG ETMDHRSESE SGFMLIPERP TKQLKVNSTS SSPSSSSSSG SLTTPQVISF GAPDPKMNLV ETSFNFSNQA
101: NMNQNAGSKI KDCGNNGGKR EPHLLKEHVL AERKRRQKLN ERLIALSALL PGLKKADKAS VLEDAIKHLK RLQERVKKLE EERVGTKKMD QSVILVKRSQ
201: VYVEDDSSSY SSTCSAASPP PSSLDEVSIL KQTMPMIEAR VSDRDLLIRI HCEKNKGCLV KILSSLEKFR LEVVNSFTLP FGSKTLVITI LSKMDNKFSR
301: PIEDVVKNIR LALAE
101: NMNQNAGSKI KDCGNNGGKR EPHLLKEHVL AERKRRQKLN ERLIALSALL PGLKKADKAS VLEDAIKHLK RLQERVKKLE EERVGTKKMD QSVILVKRSQ
201: VYVEDDSSSY SSTCSAASPP PSSLDEVSIL KQTMPMIEAR VSDRDLLIRI HCEKNKGCLV KILSSLEKFR LEVVNSFTLP FGSKTLVITI LSKMDNKFSR
301: PIEDVVKNIR LALAE
001: MDDSSFMDLM IDTDEYLIDD WESDFPICGE TNTNPGSESG SGTGFELLAE RPTKQMKTNN NMNSTSSSPS SSSSSGSRTS QVISFGSPDT KTNPVETSLN
101: FSNQVSMDQK VGSKRKDCVN NGGRREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK TDKATVLEDA IKHLKQLQER VKKLEEERVV TKKMDQSIIL
201: VKRSQVYLDD DSSSYSSTCS AASPLSSSSD EVSIFKQTMP MIEARVSDRD LLIRVHCEKN KGCMIKILSS LEKFRLEVVN SFTLPFGNST LVITILTKMD
301: NKFSRPVEEV VKNIRVALAE
101: FSNQVSMDQK VGSKRKDCVN NGGRREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK TDKATVLEDA IKHLKQLQER VKKLEEERVV TKKMDQSIIL
201: VKRSQVYLDD DSSSYSSTCS AASPLSSSSD EVSIFKQTMP MIEARVSDRD LLIRVHCEKN KGCMIKILSS LEKFRLEVVN SFTLPFGNST LVITILTKMD
301: NKFSRPVEEV VKNIRVALAE
Arabidopsis Description
NAI1NAI1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWP9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.