Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0012g01920.t01 | |
| VIT_02s0012g01930.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22760.1 | VIT_02s0012g01920.t01 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | VIT_02s0012g01930.t01 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0824g00020.t01 | Wine grape | nucleus | 69.05 | 50.88 |
| VIT_07s0205g00160.t01 | Wine grape | nucleus | 57.14 | 38.71 |
| VIT_07s0205g00190.t01 | Wine grape | nucleus | 84.92 | 31.66 |
| VIT_00s1314g00010.t01 | Wine grape | nucleus | 69.05 | 26.05 |
| VIT_07s0205g00180.t01 | Wine grape | nucleus | 67.46 | 24.29 |
| KRH28295 | Soybean | nucleus | 49.21 | 19.81 |
| CDY13735 | Canola | nucleus | 44.44 | 19.38 |
| Bra039926.1-P | Field mustard | nucleus | 44.44 | 19.31 |
| CDX89512 | Canola | nucleus | 45.24 | 19.26 |
| CDY52593 | Canola | nucleus | 42.86 | 18.95 |
| AT2G22760.1 | Thale cress | nucleus | 42.86 | 18.31 |
| Bra030208.1-P | Field mustard | nucleus | 43.65 | 18.09 |
| KRH58186 | Soybean | nucleus | 51.59 | 18.01 |
| CDY25629 | Canola | nucleus | 42.86 | 18.0 |
| KRH04348 | Soybean | nucleus | 53.17 | 17.96 |
| VIT_03s0088g01240.t01 | Wine grape | nucleus | 48.41 | 17.73 |
| KRH28296 | Soybean | nucleus | 48.41 | 17.48 |
| KRH77195 | Soybean | nucleus | 50.79 | 17.39 |
| KRH77192 | Soybean | nucleus | 46.03 | 17.01 |
| CDY52591 | Canola | nucleus | 41.27 | 16.51 |
| Bra039927.1-P | Field mustard | nucleus | 41.27 | 16.46 |
| CDY25630 | Canola | nucleus | 42.06 | 16.31 |
| CDX89513 | Canola | nucleus | 42.06 | 16.31 |
| Bra030207.1-P | Field mustard | nucleus | 41.27 | 15.95 |
| KRH04346 | Soybean | nucleus | 46.83 | 15.9 |
| KRH58189 | Soybean | nucleus | 47.62 | 15.71 |
| AT2G22770.1 | Thale cress | nucleus | 39.68 | 15.62 |
| VIT_02s0025g02610.t01 | Wine grape | nucleus | 13.49 | 4.71 |
| VIT_15s0048g02820.t01 | Wine grape | nucleus | 17.46 | 4.43 |
| VIT_02s0025g03450.t01 | Wine grape | nucleus | 18.25 | 3.66 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 19.05 | 3.62 |
| VIT_15s0046g02560.t01 | Wine grape | nucleus | 16.67 | 3.19 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 5.56 | 3.07 |
| VIT_07s0141g01060.t01 | Wine grape | nucleus | 11.9 | 3.05 |
| VIT_07s0104g00090.t01 | Wine grape | nucleus | 13.49 | 2.44 |
| VIT_15s0046g00320.t01 | Wine grape | nucleus | 11.11 | 2.32 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_07s0205g00170 | EMBL:FN594978 | EnsemblPlants:VIT_07s0205g00170.t01 | EnsemblPlantsGene:VIT_07s0205g00170 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 |
| ProteinID:CBI18609 | ProteinID:CBI18609.3 | SEG:seg | UniParc:UPI0001BE1414 | UniProt:D7SSH6 | MapMan:35.2 |
Description
No Description!
Coordinates
chr7:+:15281915..15283172
Molecular Weight (calculated)
14337.4 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.139
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEEQTAKKM VESAVTVKRY QLSDNETSSS YHNSDSSSNQ LFLEIEARVS NKDVLIRIHC QKEKGFAVKI LGEIEKLHLT VIKSSFLPFG EYNIMDITIV
101: AQMDHGFCTT AKDLVRNLRL ALLELM
101: AQMDHGFCTT AKDLVRNLRL ALLELM
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.