Factsheet for VIT_07s0205g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1314g00010.t01	Wine grape	nucleus	80.0	83.83
VIT_00s0824g00020.t01	Wine grape	nucleus	36.86	75.44
VIT_07s0205g00170.t01	Wine grape	cytosol	24.29	67.46
VIT_07s0205g00160.t01	Wine grape	nucleus	34.57	65.05
VIT_07s0205g00190.t01	Wine grape	nucleus	58.0	60.06
GSMUA_Achr8P05170_001	Banana	nucleus	27.71	48.26
VIT_00s0927g00010.t01	Wine grape	nucleus	30.57	46.93
VIT_03s0088g01240.t01	Wine grape	nucleus	44.86	45.64
GSMUA_Achr7P27600_001	Banana	nucleus	41.71	43.71
GSMUA_Achr7P00800_001	Banana	cytosol	29.14	43.59
GSMUA_Achr3P30620_001	Banana	nucleus	40.29	43.52
GSMUA_AchrUn_...	Banana	nucleus	39.43	42.86
GSMUA_Achr8P26460_001	Banana	nucleus	39.71	41.87
GSMUA_Achr2P08590_001	Banana	nucleus	31.71	41.73
GSMUA_Achr4P03160_001	Banana	nucleus	38.57	41.28
GSMUA_Achr3P26180_001	Banana	nucleus	34.29	40.68
VIT_00s0384g00020.t01	Wine grape	nucleus	22.57	40.1
GSMUA_Achr4P23070_001	Banana	nucleus	34.86	38.98
KXG37671	Sorghum	nucleus	36.57	35.96
Zm00001d033848_P004	Maize	nucleus	36.57	35.16
Os03t0725800-01	Rice	nucleus	35.14	34.26
TraesCS4B01G056600.2	Wheat	nucleus	34.29	32.09
HORVU4Hr1G009440.2	Barley	nucleus	31.14	31.96
Zm00001d013370_P001	Maize	plastid	34.0	31.9
TraesCS4D01G056900.2	Wheat	nucleus	33.71	31.47
TraesCS4A01G257900.2	Wheat	nucleus	33.43	31.03
GSMUA_Achr4P14580_001	Banana	nucleus	21.43	22.59
GSMUA_Achr4P03170_001	Banana	nucleus	20.86	21.41
VIT_02s0025g02610.t01	Wine grape	nucleus	16.86	16.34
VIT_15s0048g02820.t01	Wine grape	nucleus	19.43	13.68
VIT_07s0141g01060.t01	Wine grape	nucleus	16.57	11.81
VIT_02s0012g01320.t01	Wine grape	nucleus	21.43	11.31
VIT_15s0046g00320.t01	Wine grape	nucleus	17.14	9.93
VIT_02s0025g03450.t01	Wine grape	nucleus	17.71	9.87
VIT_07s0104g00090.t01	Wine grape	nucleus	17.14	8.62
VIT_15s0046g02560.t01	Wine grape	nucleus	15.14	8.04

Protein Annotations

EntrezGene:100254129	wikigene:100254129	MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	ProteinID:CBI18608
ProteinID:CBI18608.3	ncoils:Coil	UniProt:D7SSH5	EMBL:FN594978	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100254129
wikigene:LOC100254129	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF100	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0001BE1413	ArrayExpress:VIT_07s0205g00180	EnsemblPlantsGene:VIT_07s0205g00180	EnsemblPlants:VIT_07s0205g00180.t01	RefSeq:XP_002262843
RefSeq:XP_002262843.2	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:15283280..15290127

Molecular Weight (calculated)

39698.0 Da

IEP (calculated)

8.556

GRAVY (calculated)

-0.616

Length

350 amino acids

Sequence
(BLAST)

001: MMFKRWMNLT TGMEDPTFIH QYHMLPFDNS FDGFNFDSFS SESNSSYPSF SPETTPNFCG STFQTGVGRQ TKQFKTNSWE SCTTKPITPR APSSSTVQLI
101: SFGNSNLPPP TDTQKFHGYP DNKVKPKDED GSDRNMKFAS LISEGSYENQ NYSPKSGDRT KRVSSTCRTN NHDHVIAERK RRGKLTQRFI ALSALVPGLR
201: KMDKISVLGD AAKYLKQLQE RVQKLEEQTA TKTMESVVFV KKSQLCDDEL SSSDQNSDSC SNQTLLEIEA RVSNKDVLIR IHCERQKGFT AKILDEIEKL
301: HLTVVHCSSL PFGDYIMVTT VVARMEDKFC MTVKDLVRNL RLAFSTLHVN

Best Arabidopsis Sequence Match ( AT4G37850.2 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.