Factsheet for VIT_15s0046g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g00710.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	VIT_11s0016g00710.t01	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096050.2.1	Tomato	nucleus	70.86	70.74
PGSC0003DMT400000652	Potato	nucleus	70.03	70.74
PGSC0003DMT400018046	Potato	extracellular, nucleus	65.23	68.17
KRH68922	Soybean	nucleus	60.76	66.73
Solyc05g050560.1.1	Tomato	nucleus	63.74	66.49
KRH47899	Soybean	nucleus	64.07	61.82
KRH06456	Soybean	nucleus	63.08	61.65
KRG97199	Soybean	nucleus	62.58	61.07
GSMUA_Achr10P...	Banana	nucleus	45.36	59.7
CDX90021	Canola	nucleus	50.5	56.48
AT1G01260.1	Thale cress	nucleus	55.13	56.44
CDY27319	Canola	nucleus	41.23	56.21
GSMUA_Achr8P05350_001	Banana	nucleus	41.72	55.88
CDY66312	Canola	nucleus	42.05	55.46
Bra039279.1-P	Field mustard	nucleus	42.05	55.34
Bra033273.1-P	Field mustard	nucleus	53.48	55.31
AT2G46510.1	Thale cress	nucleus	51.32	54.77
CDX80023	Canola	nucleus	43.21	53.59
CDY56874	Canola	nucleus	43.54	53.56
Bra004532.1-P	Field mustard	nucleus	42.72	53.09
GSMUA_Achr1P28110_001	Banana	nucleus	42.72	51.91
GSMUA_Achr8P26280_001	Banana	cytosol	39.4	51.4
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	40.07	50.95
GSMUA_Achr7P14640_001	Banana	nucleus	40.56	50.62
GSMUA_Achr6P35730_001	Banana	nucleus	38.41	47.25
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	44.54	46.78
TraesCS4A01G028900.1	Wheat	nucleus	46.19	46.73
TraesCS4D01G275500.1	Wheat	nucleus	46.03	46.49
TraesCS4B01G276900.1	Wheat	nucleus	46.03	46.49
Zm00001d009013_P001	Maize	nucleus	46.03	45.5
EER99993	Sorghum	nucleus	46.85	45.5
Zm00001d039271_P001	Maize	nucleus	46.19	45.29
Os01t0235700-01	Rice	nucleus	46.19	45.22
TraesCS3A01G158600.1	Wheat	nucleus	45.86	44.97
TraesCS3B01G185400.1	Wheat	nucleus	46.03	44.48
TraesCS3D01G166300.2	Wheat	nucleus	45.7	44.16
VIT_07s0141g01060.t01	Wine grape	nucleus	34.77	42.77
EES19274	Sorghum	nucleus	40.89	42.08
HORVU3Hr1G057280.2	Barley	nucleus	46.69	36.77
Zm00001d007536_P001	Maize	plastid	32.78	32.62
VIT_02s0025g02610.t01	Wine grape	nucleus	18.05	30.19
VIT_02s0012g01320.t01	Wine grape	nucleus	31.62	28.81
VIT_15s0048g02820.t01	Wine grape	nucleus	23.51	28.57
VIT_00s0927g00010.t01	Wine grape	nucleus	9.6	25.44
VIT_07s0205g00160.t01	Wine grape	nucleus	7.78	25.27
VIT_00s0824g00020.t01	Wine grape	nucleus	6.95	24.56
VIT_00s0384g00020.t01	Wine grape	nucleus	6.79	20.81
VIT_03s0088g01240.t01	Wine grape	nucleus	10.6	18.6
VIT_02s0025g03450.t01	Wine grape	nucleus	19.04	18.31
VIT_07s0104g00090.t01	Wine grape	nucleus	20.86	18.1
VIT_07s0205g00190.t01	Wine grape	nucleus	9.93	17.75
VIT_00s1314g00010.t01	Wine grape	nucleus	9.77	17.66
VIT_07s0205g00180.t01	Wine grape	nucleus	9.93	17.14
VIT_15s0046g02560.t01	Wine grape	nucleus	18.05	16.54
VIT_07s0205g00170.t01	Wine grape	cytosol	2.32	11.11

Protein Annotations

EntrezGene:100233036	wikigene:100233036	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:ABR23669	ProteinID:ABR23669.1
ProteinID:ABV79897	ProteinID:ABV79897.1	ProteinID:CCB62546	ProteinID:CCB62546.1	ncoils:Coil	EMBL:EF636725
EMBL:EU157911	UniProt:F6I6F0	EMBL:FN596755	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	EntrezGene:MYC2
wikigene:MYC2	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF47
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000210AB6E	ArrayExpress:VIT_15s0046g00320	EnsemblPlantsGene:VIT_15s0046g00320	EnsemblPlants:VIT_15s0046g00320.t01
unigene:Vvi.6374	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:+:17338815..17341227

Molecular Weight (calculated)

67343.5 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.525

Length

604 amino acids

Sequence
(BLAST)

001: MGMGGGAWTE EDKAMVAAVL GTRAFDYLMT SSVVSENLLM AVGSDENLQT KLSDLVDRPN ASNFSWNYAI FWQISQSKSG DWVLGWGDGS CREPREGEES
101: EVTRILNIRL EDETQQRMRK RVLQKLHTLF GGSDEDSYAF GLDRVTDTEM FFLASMYFSF TRGEGGPGKS FGSGKHLWLS DALKSPSDYC VRSFLAKSAG
201: IQTIVLIPTD VGVVELGSVR SLPESLEMLQ TIRSSFSMYL PFIRGKPALP VLNEKKNESA PFSNLGTGER VEGIPKIFGQ DLNSGHSHFR EKLAVRKAEE
301: RPWDSYQNGN RLPFTNTRNG FHGSGWPHMQ GVKPASTAEM YSPQVPINNL HEMVNGVREE FRLSQFQPPK QVQMQIDFAG AASRSTLLAR PISVESEHSD
401: VEASCKDERP GPADERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAITYITELQ KKLKDMESER EKFGSTSRDA
501: LSLETNTEAE THIQASDVDI QAANDEVIVR VSCPLDTHPV SRVIQTFKEA QITVIESKLA AANDTVFHTF VIKSQGSEQL MKEKLTAAFS RESNSLQPLS
601: SSVG

Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.