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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G169300.1
TraesCS2B01G195600.1
TraesCS2D01G176800.1
TraesCS5A01G212800.1
TraesCS5B01G211000.1
TraesCS5D01G219300.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01260.1 TraesCS2A01G169300.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS2B01G195600.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS2D01G176800.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS5A01G212800.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS5B01G211000.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS5D01G219300.2 AT1G19180.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G158600.1 Wheat nucleus 97.92 99.35
TraesCS3D01G166300.2 Wheat nucleus 98.88 98.88
HORVU3Hr1G057280.2 Barley nucleus 96.8 78.88
TraesCS4B01G276900.1 Wheat nucleus 64.16 67.06
EES19274 Sorghum nucleus 58.56 62.35
GSMUA_Achr10P... Banana nucleus 43.84 59.7
GSMUA_Achr7P14640_001 Banana nucleus 43.52 56.2
GSMUA_Achr8P05350_001 Banana nucleus 35.84 49.67
GSMUA_Achr1P28110_001 Banana nucleus 39.36 49.5
GSMUA_AchrUn_... Banana cytosol, nucleus, plastid 35.84 47.16
GSMUA_Achr8P26280_001 Banana cytosol 34.88 47.08
VIT_15s0046g00320.t01 Wine grape nucleus 44.48 46.03
KRH68922 Soybean nucleus 40.48 46.0
CDY27319 Canola nucleus 32.32 45.6
Solyc01g096050.2.1 Tomato nucleus 43.84 45.29
PGSC0003DMT400000652 Potato nucleus 43.2 45.15
GSMUA_Achr6P35730_001 Banana nucleus 34.56 43.99
CDY66312 Canola nucleus 32.16 43.89
KRH06456 Soybean nucleus 43.36 43.85
PGSC0003DMT400018046 Potato extracellular, nucleus 40.48 43.77
KRH47899 Soybean nucleus 43.68 43.61
Bra039279.1-P Field mustard nucleus 32.0 43.57
GSMUA_Achr1P14370_001 Banana cytosol, nucleus, plastid 39.36 42.78
TraesCS3B01G288700.1 Wheat nucleus 30.24 42.66
Solyc05g050560.1.1 Tomato nucleus 39.52 42.66
TraesCS3B01G284800.1 Wheat nucleus 32.0 42.11
Bra004532.1-P Field mustard nucleus 32.16 41.36
KRG97199 Soybean nucleus 40.96 41.36
CDY56874 Canola nucleus 32.48 41.34
CDX80023 Canola nucleus 32.16 41.27
CDX90021 Canola nucleus 35.2 40.74
AT1G01260.1 Thale cress nucleus 38.24 40.51
Bra033273.1-P Field mustard nucleus 36.64 39.21
AT2G46510.1 Thale cress nucleus 34.72 38.34
TraesCS5B01G306600.1 Wheat nucleus 12.0 27.47
TraesCS5B01G307100.1 Wheat nucleus 11.84 27.11
TraesCS5B01G307000.1 Wheat nucleus 12.0 26.88
TraesCS1B01G208000.1 Wheat nucleus 28.48 25.69
TraesCS5B01G306800.1 Wheat nucleus 11.2 25.0
TraesCS2B01G469300.1 Wheat nucleus 10.08 24.61
TraesCS2B01G469200.1 Wheat nucleus 9.6 24.39
TraesCS1B01G387900.1 Wheat nucleus 8.64 22.59
TraesCS2B01G428000.1 Wheat nucleus 19.2 20.94
TraesCS4B01G397400.1 Wheat nucleus 17.76 19.68
TraesCS4B01G397800.1 Wheat nucleus 15.36 18.82
TraesCS4B01G335200.1 Wheat nucleus 7.36 18.7
TraesCS5B01G518800.1 Wheat nucleus 8.64 17.14
TraesCS4B01G345800.1 Wheat nucleus 8.32 16.72
TraesCS4B01G397300.1 Wheat nucleus 10.88 16.71
TraesCS4B01G234700.1 Wheat nucleus 8.0 16.61
TraesCS4B01G020700.1 Wheat nucleus 9.6 16.44
TraesCS5B01G518400.1 Wheat nucleus 8.48 16.31
TraesCS1B01G112900.1 Wheat nucleus 16.32 16.16
TraesCS4B01G308100.1 Wheat nucleus 8.96 16.14
TraesCS4B01G056600.2 Wheat nucleus 9.6 16.04
TraesCS4B01G021500.1 Wheat nucleus 9.12 15.97
TraesCS4B01G020900.1 Wheat nucleus 9.44 15.95
TraesCS3B01G029800.1 Wheat nucleus 8.32 15.85
TraesCS4B01G308200.1 Wheat nucleus 9.12 15.83
TraesCS5B01G518500.1 Wheat nucleus 8.16 15.69
TraesCS4B01G308300.1 Wheat nucleus 9.12 15.66
TraesCS4B01G391500.1 Wheat nucleus 8.0 15.58
TraesCS1B01G113100.4 Wheat nucleus 16.96 15.41
TraesCS4B01G021100.1 Wheat nucleus 8.8 15.15
TraesCS7B01G483600.1 Wheat nucleus 7.52 14.64
TraesCS4B01G021200.1 Wheat nucleus 8.64 14.63
TraesCS5B01G013000.2 Wheat nucleus 8.8 14.55
Protein Annotations
EnsemblPlants:TraesCS3B01G185400.1EnsemblPlantsGene:TraesCS3B01G185400Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:MYC/MYB_NInterPro:bHLH_dom
ncoils:CoilPANTHER:PTHR11514PANTHER:PTHR11514:SF47PFAM:PF00010PFAM:PF14215PFscan:PS50888
SEG:segSMART:SM00353SUPFAM:SSF47459TIGR:cd00083MapMan:15.5.32:
Description
No Description!
Coordinates
chr3B:-:201339407..201341777
Molecular Weight (calculated)
68241.9 Da
IEP (calculated)
7.607
GRAVY (calculated)
-0.488
Length
625 amino acids
Sequence
(BLAST)
001: MPSYTGLMVM KMEVEEDGAN GGNGGAWTEE DRDLSTTVLG RDAFAYLTKG GGTISEGLVA ASSPVDLQNK LQELIESEHP GAGWNYAIFW QLSRTKSGDL
101: VLGWGDGSCR EPNDAELAAA ASAGNDDAKQ RMRKRVLQRL HKAFGGADEE DYAPTIGQVT DTEMFFLASM YFAFPRRAGA PGQVFAAGLP LWVPNSERNV
201: FPANYCYRGY LASTAGFRTI LLVPFETGVL ELGSMQQVAE SSDTLQTIKS VFAGTGGNKD IIPSREGNGH IERSPGLAKI FGKDLNLGRS SAGPVIGASK
301: VDERPWEQRT AGGGSSLLPN VQKGLQSFTW SQARGLNSHQ QKFGNGILIV SNEATHGNNR AADSSTTTQF QLQKAPQLQK LPLLQKPPQL VKPLQMVNQQ
401: QLQPQAPRQI DFSAGTSSKS GVLVTRAAVL DGDSSEVNGL CKEEGTTPVI EDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM
501: DKASLLGDAI AYITDLQKKL KDMETERERF LESGMVDPRE RAPRPEVDIQ VVQDEVLVRV MSPLENHPVK KVFEAFEEAD VRVGESKLTG NNGTVVHSFI
601: IKCPGSEQKT REKVIAAMSR AMSSV
Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)
001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
Arabidopsis Description
BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.