Factsheet for TraesCS1B01G112900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G102400.2
TraesCS1B01G112900.1
TraesCS1B01G113100.4
TraesCS1D01G094200.1
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS5A01G329900.1
TraesCS5B01G330100.1
TraesCS5D01G335700.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCS7A01G272100.1
TraesCS7B01G169900.1
TraesCS7D01G272400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS1A01G102400.2	AT4G09820.1	18532977
AT4G09820.1	TraesCS1B01G112900.1	AT4G09820.1	18532977
AT4G09820.1	TraesCS1B01G113100.4	AT4G09820.1	18532977
AT4G09820.1	TraesCS1D01G094200.1	AT4G09820.1	18532977
AT4G09820.1	TraesCS5A01G329900.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS5B01G330100.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS5D01G335700.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7A01G272100.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7B01G169900.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7D01G272400.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS6A01G259400.1	AT5G24520.1	15255866
AT4G09820.1	TraesCS6B01G286700.1	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	88.43	89.14
TraesCS1B01G113100.4	Wheat	nucleus	91.76	84.16
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	60.86	75.44
TraesCS1D01G094200.1	Wheat	nucleus	69.73	69.73
OQU88697	Sorghum	nucleus	51.03	47.56
GSMUA_Achr3P17620_001	Banana	nucleus	40.41	45.21
Zm00001d019170_P001	Maize	nucleus	47.7	44.66
GSMUA_Achr6P21490_001	Banana	nucleus	43.74	42.4
AT4G09820.1	Thale cress	nucleus	34.23	41.7
CDX86891	Canola	nucleus	33.12	40.12
CDX99505	Canola	nucleus	33.12	40.12
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	35.82	39.51
KRH71432	Soybean	nucleus	40.89	39.51
VIT_07s0104g00090.t01	Wine grape	nucleus	43.11	39.08
KRH32008	Soybean	extracellular, plastid	41.05	39.01
Bra037887.1-P	Field mustard	nucleus	30.43	38.63
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	35.82	38.44
Solyc09g065100.1.1	Tomato	nucleus	38.35	35.59
PGSC0003DMT400033569	Potato	nucleus	32.81	35.08
TraesCS2B01G428000.1	Wheat	nucleus	26.78	29.49
TraesCS4B01G397400.1	Wheat	nucleus	25.83	28.9
TraesCS4B01G397800.1	Wheat	nucleus	21.55	26.67
PGSC0003DMT400028054	Potato	cytosol	7.61	24.37
PGSC0003DMT400028052	Potato	nucleus	7.61	23.65
TraesCS3B01G288700.1	Wheat	nucleus	15.85	22.57
TraesCS4B01G397300.1	Wheat	nucleus	13.63	21.13
TraesCS2B01G469200.1	Wheat	nucleus	8.08	20.73
TraesCS2B01G469300.1	Wheat	nucleus	8.4	20.7
TraesCS3B01G284800.1	Wheat	nucleus	15.37	20.42
TraesCS4B01G234700.1	Wheat	nucleus	9.67	20.27
TraesCS4B01G345800.1	Wheat	nucleus	9.98	20.26
TraesCS5B01G307100.1	Wheat	nucleus	8.72	20.15
TraesCS5B01G306800.1	Wheat	nucleus	8.72	19.64
TraesCS4B01G335200.1	Wheat	nucleus	7.61	19.51
TraesCS5B01G306600.1	Wheat	nucleus	8.4	19.41
TraesCS5B01G307000.1	Wheat	nucleus	8.56	19.35
TraesCS4B01G391500.1	Wheat	nucleus	9.83	19.31
TraesCS1B01G387900.1	Wheat	nucleus	7.29	19.25
TraesCS4B01G276900.1	Wheat	nucleus	16.64	17.56
TraesCS5B01G518400.1	Wheat	nucleus	9.03	17.54
TraesCS1B01G208000.1	Wheat	nucleus	19.02	17.32
TraesCS5B01G518500.1	Wheat	nucleus	8.87	17.23
TraesCS5B01G518800.1	Wheat	nucleus	8.4	16.83
TraesCS3B01G185400.1	Wheat	nucleus	16.16	16.32
TraesCS4B01G021500.1	Wheat	nucleus	9.19	16.25
TraesCS4B01G021100.1	Wheat	nucleus	9.19	15.98
TraesCS4B01G021200.1	Wheat	nucleus	9.03	15.45
TraesCS4B01G020900.1	Wheat	nucleus	9.03	15.41
TraesCS4B01G020700.1	Wheat	nucleus	8.72	15.07
TraesCS5B01G013000.2	Wheat	nucleus	8.87	14.81
TraesCS4B01G056600.2	Wheat	nucleus	8.56	14.44
TraesCS4B01G308100.1	Wheat	nucleus	7.92	14.41
TraesCS7B01G483600.1	Wheat	nucleus	7.29	14.33
TraesCS4B01G308200.1	Wheat	nucleus	7.77	13.61
TraesCS4B01G308300.1	Wheat	nucleus	7.61	13.19
TraesCS3B01G029800.1	Wheat	nucleus	6.66	12.8

Protein Annotations

MapMan:15.5.32	Gene3D:3.30.450.40	Gene3D:4.10.280.10	InterPro:GAF-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR029016	InterPro:IPR036638
InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS1B01G112900	EnsemblPlants:TraesCS1B01G112900.1	InterPro:bHLH_dom	TIGR:cd00083
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:131456949..131464291

Molecular Weight (calculated)

69229.6 Da

IEP (calculated)

6.209

GRAVY (calculated)

-0.397

Length

631 amino acids

Sequence
(BLAST)

001: MASSGEVHRS LQAVAQRLRW TYAILWQLCP DQGALVWAEG HYNGAIKTRK TVQPAVAQAQ APAPAAEAAD QARSRQLREL FDSLAREAAA GGGTGFRDVH
101: GCAQEARRPS AALAPEDLTE TEWFYLMSAS YSFPPGVGLP GRAFARGGHV WLSRANEVDS KAFSRAILAR SAGIKTVVCI PIIDGVMEIG TTEKVEEDMG
201: LVQYAMAIFM DQQETHMIPS ICHSNQTSHI DQQSLQTHTG QTKPEPNKFD TEYEDDEMEY DDDDEIDAGC TSGSASHDDH ATHNAGSSEL MQVEMSERVR
301: DGCSSNLGDE IQMLMVCQNG TSDHSNLHGQ DEAWHFLYEE LCSGYPQSSA AGENQSMAEN AHYAHTVTLI LHRNNALRQA NGLNTRSYLA VSHQSSFSRW
401: DAGIHGRTVA QGTTRQKMVK SVLLFFSAAC NKPPGDLILR CDEAGARREV DFGASHVMQE RKRREKLNER FIILRSLVPF VTKARTQSSA KKLQSFLHGC
501: QMDKASILGD TIEYVKQLTK RIQDLESSTV RGAAMPKEKR TLLTGKEGAS SSSGSSSSAP LATDVQVSII ESDALLELRC PDRRGLLVTI MQALQEQLRL
601: EVTSVQASSD HGVLLAEMRA KVQLFLVRSS V

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.