Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- plasma membrane 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400028054 | Potato | cytosol | 96.06 | 98.98 |
| PGSC0003DMT400028057 | Potato | nucleus | 98.03 | 51.16 |
| PGSC0003DMT400014089 | Potato | nucleus | 93.6 | 49.48 |
| PGSC0003DMT400014097 | Potato | nucleus | 52.22 | 23.19 |
| PGSC0003DMT400047220 | Potato | nucleus | 42.86 | 19.25 |
| PGSC0003DMT400031899 | Potato | plastid | 34.98 | 16.47 |
| PGSC0003DMT400015017 | Potato | nucleus | 36.95 | 16.45 |
| PGSC0003DMT400051672 | Potato | nucleus | 25.62 | 10.9 |
| PGSC0003DMT400002963 | Potato | nucleus | 30.54 | 10.37 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 28.57 | 10.03 |
| PGSC0003DMT400000652 | Potato | nucleus | 29.56 | 10.03 |
| AT4G09820.1 | Thale cress | nucleus | 25.12 | 9.85 |
| GSMUA_Achr3P17620_001 | Banana | nucleus | 27.09 | 9.75 |
| PGSC0003DMT400045204 | Potato | nucleus | 31.03 | 9.08 |
| CDX99505 | Canola | nucleus | 23.15 | 9.02 |
| CDX86891 | Canola | nucleus | 23.15 | 9.02 |
| KRG95511 | Soybean | cytosol, mitochondrion, nucleus, plastid | 26.11 | 9.01 |
| KRH67189 | Soybean | cytosol, mitochondrion, nucleus, plastid | 24.63 | 8.74 |
| GSMUA_Achr6P21490_001 | Banana | nucleus | 26.11 | 8.14 |
| TraesCS1A01G102400.2 | Wheat | nucleus, vacuole | 24.14 | 7.83 |
| KRH71432 | Soybean | nucleus | 25.12 | 7.81 |
| KRH32008 | Soybean | extracellular, plastid | 25.12 | 7.68 |
| TraesCS1B01G112900.1 | Wheat | nucleus | 23.65 | 7.61 |
| VIT_07s0104g00090.t01 | Wine grape | nucleus | 25.62 | 7.47 |
| Bra037887.1-P | Field mustard | nucleus | 17.73 | 7.24 |
| TraesCS1B01G113100.4 | Wheat | nucleus | 23.65 | 6.98 |
| OQU88697 | Sorghum | nucleus | 22.17 | 6.65 |
| Zm00001d019170_P001 | Maize | nucleus | 20.69 | 6.23 |
| PGSC0003DMT400033569 | Potato | nucleus | 16.26 | 5.59 |
| PGSC0003DMT400033757 | Potato | nucleus | 4.93 | 4.76 |
| HORVU1Hr1G020370.2 | Barley | extracellular, nucleus | 10.34 | 4.13 |
| TraesCS1D01G094200.1 | Wheat | nucleus | 10.84 | 3.49 |
| PGSC0003DMT400078696 | Potato | nucleus | 5.91 | 3.46 |
| PGSC0003DMT400078698 | Potato | nucleus | 3.45 | 3.35 |
| PGSC0003DMT400078699 | Potato | nucleus | 2.96 | 1.86 |
| PGSC0003DMT400013074 | Potato | nucleus | 2.96 | 1.7 |
| PGSC0003DMT400032140 | Potato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400028052 | EnsemblPlantsGene:PGSC0003DMG402010822 | InterPro:MYC/MYB_N | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF40 | PFAM:PF14215 |
| PGSC:PGSC0003DMG402010822 | SEG:seg | UniParc:UPI00029633A6 | UniProt:M1AQM0 | MapMan:35.1 | : |
Description
MYC2 [Source:PGSC_GENE;Acc:PGSC0003DMG402010822]
Coordinates
chr10:+:4900135..4901030
Molecular Weight (calculated)
22982.9 Da
IEP (calculated)
4.794
GRAVY (calculated)
-0.214
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEPIFSTSS SPSSLQHRLQ YIFKNQTNYY SDWAYAIFWQ SSNNSLSLTW GDGHLNMKTT NNKDVEWFYL MSLAQCFSVG EGVVGKCFSS DSFVWLTGDQ
101: QFEFCHCERA KEAHYVHGIN TFVYIPISSG VLELGSSTVI KQDLNLVQQV KSLFFGYETI GPIDDFGLFN CLEQYGQEAK KGEIVVGTTP QENKVGFKVS
201: CFN
101: QFEFCHCERA KEAHYVHGIN TFVYIPISSG VLELGSSTVI KQDLNLVQQV KSLFFGYETI GPIDDFGLFN CLEQYGQEAK KGEIVVGTTP QENKVGFKVS
201: CFN
001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL
Arabidopsis Description
BHLH14Transcription factor bHLH14 [Source:UniProtKB/Swiss-Prot;Acc:O23090]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.