Factsheet for PGSC0003DMT400001513

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400028052
PGSC0003DMT400028054
PGSC0003DMT400032140
PGSC0003DMT400033569

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	PGSC0003DMT400032140	AT1G63650.1	12917293
AT5G24520.1	PGSC0003DMT400028052	AT4G09820.1	15255866
AT5G24520.1	PGSC0003DMT400028054	AT4G09820.1	15255866
AT5G24520.1	PGSC0003DMT400033569	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068077	Potato	cytosol	96.78	96.78
PGSC0003DMT400094468	Potato	cytosol	82.75	82.51
VIT_16s0098g00870.t01	Wine grape	nucleus	80.12	81.55
CDX80449	Canola	cytosol	54.97	78.99
KRH64293	Soybean	cytosol	75.15	76.72
KRH53635	Soybean	cytosol	75.15	76.49
AT5G24520.1	Thale cress	cytosol	76.02	76.25
Bra009770.1-P	Field mustard	cytosol	74.85	75.96
Bra029411.1-P	Field mustard	cytosol	25.15	71.67
CDY05440	Canola	cytosol	24.85	70.83
GSMUA_Achr4P29160_001	Banana	cytosol	64.91	70.03
Zm00001d017616_P001	Maize	extracellular	61.99	60.06
Os02t0682500-01	Rice	cytosol	61.7	59.44
EES05725	Sorghum	cytosol	54.97	59.12
TraesCS6A01G259400.1	Wheat	cytosol	61.11	58.71
TraesCS6B01G286700.1	Wheat	cytosol	60.82	58.43
PGSC0003DMT400025654	Potato	cytosol	58.77	57.93
HORVU0Hr1G016450.1	Barley	cytosol	60.82	55.17
GSMUA_Achr5P10240_001	Banana	nucleus	24.56	34.43

Protein Annotations

EntrezGene:102589991	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:AEF01097	ProteinID:AEF01097.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EMBL:HQ599506	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0ZIL8	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400000561	PGSC:PGSC0003DMG400000561	EnsemblPlants:PGSC0003DMT400001513	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF2	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000296CC96	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_006347519.1	RefSeq:XP_006347520.1	:	:	:	:

Description

Transparent testa glabra 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400000561]

Coordinates

chr3:+:47410196..47411865

Molecular Weight (calculated)

38413.2 Da

IEP (calculated)

4.669

GRAVY (calculated)

-0.286

Length

342 amino acids

Sequence
(BLAST)

001: MENSSQESHL RSENSVTYDS SYPIYAMAFS SFTSSLPSRR RRLAVGSFIE EFNNRVDILS FDEDTLTLKP VPNLSFEHPY PPTKLMFHPN PSASLKTNDI
101: LASSGDYLRL WDVRETSIEP LFTLSNNKTS EYCAPLTSFD WNEVEPRRIG TSSIDTTCTI WDVEKGVVET QLIAHDKEVY DIAWGEAGVF ASVSADGSVR
201: IFDLRDKEHS TIIYESPKPD TPLLRLAWNK QDLRYMATIL MDNNKIVILD IRSPAMPVAE LERHQASVNA IAWAPQSCRH ICSAGDDGQA LIWELPTVAG
301: PNGIDPMSMY SAGAEINQIQ WSAAQRDWIA IAFSNKLQLL KV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.