Factsheet for Bra009770.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027653.1-P
Bra027796.1-P
Bra037887.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	Bra027653.1-P	AT1G63650.1	12917293
AT5G24520.1	Bra027796.1-P	AT1G63650.1	12917293
AT5G24520.1	Bra037887.1-P	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80449	Canola	cytosol	66.77	94.54
AT5G24520.1	Thale cress	cytosol	93.47	92.38
VIT_16s0098g00870.t01	Wine grape	nucleus	76.85	77.08
KRH53635	Soybean	cytosol	76.56	76.79
KRH64293	Soybean	cytosol	75.96	76.42
Bra029411.1-P	Field mustard	cytosol	27.0	75.83
Solyc03g097340.1.1	Tomato	cytosol	75.96	74.85
PGSC0003DMT400001513	Potato	nucleus	75.96	74.85
PGSC0003DMT400068077	Potato	cytosol	75.67	74.56
GSMUA_Achr4P29160_001	Banana	cytosol	62.91	66.88
PGSC0003DMT400094468	Potato	cytosol	66.77	65.6
Solyc03g081210.1.1	Tomato	cytosol	64.39	63.45
TraesCS6A01G259400.1	Wheat	cytosol	64.39	60.96
TraesCS6B01G286700.1	Wheat	cytosol	64.09	60.67
Zm00001d017616_P001	Maize	extracellular	63.5	60.62
Os02t0682500-01	Rice	cytosol	63.5	60.28
EES05725	Sorghum	cytosol	55.49	58.8
HORVU0Hr1G016450.1	Barley	cytosol	64.09	57.29
Bra019798.1-P	Field mustard	extracellular	11.28	56.72
Bra029410.1-P	Field mustard	cytosol	16.02	52.94
Bra026947.1-P	Field mustard	cytosol	57.86	51.05
GSMUA_Achr5P10240_001	Banana	nucleus	22.55	31.15

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A5HB99	ProteinID:ABQ10570	ProteinID:ABQ10570.1	ProteinID:ABQ10571
ProteinID:ABQ10571.1	ProteinID:ASN77901.1	EnsemblPlantsGene:Bra009770	EnsemblPlants:Bra009770.1	EnsemblPlants:Bra009770.1-P	EMBL:EF434562
EMBL:EF434563	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF2	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000150CA65	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT5G24520 (E=1e-176) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding

Coordinates

chrA06:-:17121783..17122796

Molecular Weight (calculated)

37279.8 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.241

Length

337 amino acids

Sequence
(BLAST)

001: MDNSAPDSLP RSETAVTYDS PYPLYAMSFS SSTHRIAVGS FLEDYNNRID ILSFDSDSMS LKPLPSLSFE HPYPPTKLMF SPPSLRRSGG GDLLASSGDF
101: LRLWEVNEDS SSAEPVSVLN NSKTSEFCAP LTSFDWNDVE PKRLGTCSID TTCTIWDVER SVVETQLIAH DKEVHDIAWG EARVFASVSA DGSVRIFDLR
201: DKEHSTIIYE SPQPDTPLLR LAWNKQDLRC MATILMDSNK VVILDIRSPT MPVAELERHQ GSVNAIAWAP QSCKHICSGG DDAQALIWEL PTMAGPNGID
301: PMSVYSAGSE INQLQWSSSL PDWIGIAFAN KMQLLRV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.