CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU81560
OQU82117
OQU82119
OQU82120
OQU88697

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	OQU81560	AT1G63650.1	12917293
AT5G24520.1	OQU82117	AT1G63650.1	12917293
AT5G24520.1	OQU82119	AT1G63650.1	12917293
AT5G24520.1	OQU82120	AT1G63650.1	12917293
AT5G24520.1	OQU88697	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017616_P001	Maize	extracellular	88.05	79.32
TraesCS6B01G286700.1	Wheat	cytosol	83.02	74.16
TraesCS6A01G259400.1	Wheat	cytosol	83.02	74.16
Os02t0682500-01	Rice	cytosol	80.5	72.11
HORVU0Hr1G016450.1	Barley	cytosol	83.65	70.56
CDX80449	Canola	cytosol	44.03	58.82
GSMUA_Achr4P29160_001	Banana	cytosol	56.92	57.1
AT5G24520.1	Thale cress	cytosol	60.38	56.3
KRH53635	Soybean	cytosol	59.12	55.95
PGSC0003DMT400068077	Potato	cytosol	59.75	55.56
KRH64293	Soybean	cytosol	58.49	55.52
Bra009770.1-P	Field mustard	cytosol	58.8	55.49
VIT_16s0098g00870.t01	Wine grape	nucleus	58.49	55.36
Solyc03g097340.1.1	Tomato	cytosol	59.43	55.26
PGSC0003DMT400001513	Potato	nucleus	59.12	54.97
CDY05440	Canola	cytosol	18.55	49.17
Bra029411.1-P	Field mustard	cytosol	18.55	49.17
PGSC0003DMT400094468	Potato	cytosol	52.52	48.69
Solyc03g081210.1.1	Tomato	cytosol	49.37	45.91
CDY05439	Canola	cytosol	14.47	45.1
Bra029410.1-P	Field mustard	cytosol	14.47	45.1
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	51.26	39.18
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	51.26	39.18
GSMUA_Achr5P10240_001	Banana	nucleus	23.9	31.15

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:8076027	UniProt:C5Y0X7	EnsemblPlants:EES05725	ProteinID:EES05725
ProteinID:EES05725.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150
GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009957	GO:GO:0009987	GO:GO:0010026
GO:GO:0030154	GO:GO:0032880	GO:GO:0045165	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EMBL:JX122969	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF2	SMART:SM00320	EnsemblPlantsGene:SORBI_3004G280800	SUPFAM:SSF50978	UniParc:UPI0001A85EE1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002452749.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:62315396..62318779

Molecular Weight (calculated)

34060.0 Da

IEP (calculated)

5.321

GRAVY (calculated)

-0.081

Length

318 amino acids

Sequence
(BLAST)

001: MDLPKPPSTA ASSSGAETPN PHAFTCELPH SIYALAFSPG APVLASGSFL EDLHNRVSLL SFDPVRPSAA SFRALPALSF DHPYPPTKLQ FNPRAAAPSL
101: LASSADTLRI WHAPLDDLSA TASAPELRSV LDNRKAASEF CAPLTSFDWN EVEPRRIGTA SIDTTCTVWD IDLGVVETQL IAHDKAVHDI AWGEAGVFAS
201: VSADGSVRVF DLRDKEHSTI VYESPRPDTP LLRLAWNRSD LRYMAALLMD SSAVVVLDIR APGVPVAELH RHRACANAVA WAPQATRHLC SAGDDGQALI
301: WELPETAAGS GGCARRGD

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.