CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95511
KRH32008
KRH67189
KRH71432

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	KRG95511	AT4G09820.1	15255866
AT5G24520.1	KRH32008	AT4G09820.1	15255866
AT5G24520.1	KRH67189	AT4G09820.1	15255866
AT5G24520.1	KRH71432	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64293	Soybean	cytosol	95.24	95.52
CDX80449	Canola	cytosol	57.44	81.09
VIT_16s0098g00870.t01	Wine grape	nucleus	78.27	78.27
Bra009770.1-P	Field mustard	cytosol	76.79	76.56
AT5G24520.1	Thale cress	cytosol	76.49	75.37
PGSC0003DMT400001513	Potato	nucleus	76.49	75.15
PGSC0003DMT400068077	Potato	cytosol	75.89	74.56
Solyc03g097340.1.1	Tomato	cytosol	75.6	74.27
GSMUA_Achr4P29160_001	Banana	cytosol	66.07	70.03
Bra029411.1-P	Field mustard	cytosol	24.4	68.33
CDY05440	Canola	cytosol	24.11	67.5
PGSC0003DMT400094468	Potato	cytosol	67.26	65.89
Solyc03g081210.1.1	Tomato	cytosol	66.37	65.2
Zm00001d017616_P001	Maize	extracellular	63.99	60.91
Os02t0682500-01	Rice	cytosol	63.99	60.56
TraesCS6A01G259400.1	Wheat	cytosol	63.99	60.39
TraesCS6B01G286700.1	Wheat	cytosol	63.69	60.11
EES05725	Sorghum	cytosol	55.95	59.12
KRH06773	Soybean	nucleus	60.12	58.72
KRG94752	Soybean	cytosol	60.12	58.72
HORVU0Hr1G016450.1	Barley	cytosol	63.69	56.76
GSMUA_Achr5P10240_001	Banana	nucleus	24.7	34.02

Protein Annotations

EntrezGene:100804923	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02003479	EnsemblPlantsGene:GLYMA_06G136900	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
UniProt:I1KB20	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH53635	ProteinID:KRH53635
ProteinID:KRH53635.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF2	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002339E70	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:11201654..11203429

Molecular Weight (calculated)

37751.2 Da

IEP (calculated)

4.781

GRAVY (calculated)

-0.304

Length

336 amino acids

Sequence
(BLAST)

001: MENSTEESHL RSENSVTYES PYPIYGMSFS PSHPHRLALG SFIEEYNNRV DILSFHPDTL SVTPHPSLSF DHPYPPTKLM FHPRKPSPSS SSDLLATSGD
101: YLRLWEIRDN SVDAVSLFNN SKTSEFCAPL TSFDWNDIDP NRIATSSIDT TCTIWDIERT LVETQLIAHD KEVYDIAWGE ARVFASVSAD GSVRIFDLRD
201: KEHSTIIYES PHPDTPLLRL AWNKQDLRYM ATILMDSNKV VILDIRSPTT PVAELERHRG SVNAIAWAPH SSTHICSAGD DTQALIWELP TLASPTGIDP
301: VCMYSAGCEI NQLQWSAAQP DWIAIAFANK MQLLKV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.