CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86891
CDX99505
CDY08314
CDY25513
CDY34367
CDY72121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	CDY08314	AT1G63650.1	12917293
AT5G24520.1	CDY25513	AT1G63650.1	12917293
AT5G24520.1	CDY34367	AT1G63650.1	12917293
AT5G24520.1	CDY72121	AT1G63650.1	12917293
AT5G24520.1	CDX86891	AT4G09820.1	15255866
AT5G24520.1	CDX99505	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029411.1-P	Field mustard	cytosol	99.17	99.17
CDX80449	Canola	cytosol	74.17	37.4
AT5G24520.1	Thale cress	cytosol	75.0	26.39
CDY05439	Canola	cytosol	21.67	25.49
Solyc03g097340.1.1	Tomato	cytosol	71.67	25.15
PGSC0003DMT400068077	Potato	cytosol	70.83	24.85
PGSC0003DMT400001513	Potato	nucleus	70.83	24.85
VIT_16s0098g00870.t01	Wine grape	nucleus	68.33	24.4
KRH64293	Soybean	cytosol	67.5	24.18
KRH53635	Soybean	cytosol	67.5	24.11
GSMUA_Achr4P29160_001	Banana	cytosol	59.17	22.4
CDY70647	Canola	cytosol	24.17	21.97
CDY65575	Canola	cytosol	24.17	21.97
PGSC0003DMT400094468	Potato	cytosol	59.17	20.7
TraesCS6B01G286700.1	Wheat	cytosol	60.0	20.22
TraesCS6A01G259400.1	Wheat	cytosol	60.0	20.22
Zm00001d017616_P001	Maize	extracellular	57.5	19.55
CDY19411	Canola	extracellular, plastid	14.17	18.89
Os02t0682500-01	Rice	cytosol	55.83	18.87
HORVU0Hr1G016450.1	Barley	cytosol	59.17	18.83
CDY16039	Canola	cytosol	54.17	18.79
EES05725	Sorghum	cytosol	49.17	18.55
CDY26600	Canola	cytosol	53.33	18.5
Solyc03g081210.1.1	Tomato	cytosol	50.83	17.84
CDY65574	Canola	nucleus	9.17	10.48
CDY70646	Canola	nucleus	9.17	10.48
CDX98027	Canola	extracellular	5.0	8.96
GSMUA_Achr5P10240_001	Banana	nucleus	10.0	4.92
CDY39498	Canola	cytosol	2.5	2.54

Protein Annotations

EnsemblPlants:CDY05440	EnsemblPlantsGene:GSBRNA2T00120346001	Gene3D:2.130.10.10	GO:A0A078ETQ1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR19919	PANTHER:PTHR19919:SF2
ProteinID:CDY05440	ProteinID:CDY05440.1	SUPFAM:SSF50978	UniParc:UPI0004EF0C88	MapMan:35.1	:

Description

BnaA02g32510D

Coordinates

chrLK031962:+:109464..109826

Molecular Weight (calculated)

13457.1 Da

IEP (calculated)

6.089

GRAVY (calculated)

-0.428

Length

120 amino acids

Sequence
(BLAST)

001: MTARGEKLES LRLPPPMGPS GSFDLHDKEH YTIIYESPQA DTPLLRIAWN KQDLRYMATN LMDSNKVVIL DIRSPKMPVA ELERHQGSVN GLAWALQSCK
101: HIYSDGIDPM SVYSAGSEIN

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.