CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70646	Canola	nucleus	96.19	96.19
CDY39498	Canola	cytosol	54.29	48.31
CDY26600	Canola	cytosol	63.81	19.36
CDY16039	Canola	cytosol	62.86	19.08
AT3G26640.1	Thale cress	cytosol	60.95	18.5
AT1G12910.1	Thale cress	cytosol	60.95	18.5
GSMUA_Achr10P...	Banana	cytosol	50.48	18.34
VIT_14s0068g00660.t01	Wine grape	cytosol	57.14	17.44
KRH06773	Soybean	nucleus	57.14	17.44
KRG94752	Soybean	cytosol	57.14	17.44
PGSC0003DMT400025654	Potato	cytosol	57.14	17.29
Bra026947.1-P	Field mustard	cytosol	62.86	17.28
Solyc04g082470.1.1	Tomato	nucleus	56.19	17.0
GSMUA_Achr6P11830_001	Banana	cytosol	52.38	16.08
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	46.67	11.86
TraesCS6A01G193300.1	Wheat	cytosol	46.67	11.81
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	45.71	11.68
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	45.71	11.54
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	45.71	11.54
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	45.71	11.54
CDY05440	Canola	cytosol	10.48	9.17
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	35.24	8.77
CDY70647	Canola	cytosol	6.67	5.3
CDY65575	Canola	cytosol	6.67	5.3
CDX80449	Canola	cytosol	9.52	4.2
CDY19411	Canola	extracellular, plastid	1.9	2.22
CDX98027	Canola	extracellular	0.95	1.49
CDY05439	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY65574	EnsemblPlantsGene:GSBRNA2T00046826001	PANTHER:PTHR19919	PANTHER:PTHR19919:SF9	ProteinID:CDY65574	ProteinID:CDY65574.1
SEG:seg	UniParc:UPI0004EDD4B1	UniProt:A0A078JFU5	MapMan:35.1	:	:

Description

BnaCnng47790DBnaCnng47790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFU5]

Coordinates

chrLK034838:+:22240..22557

Molecular Weight (calculated)

11710.6 Da

IEP (calculated)

9.053

GRAVY (calculated)

-0.697

Length

105 amino acids

Sequence
(BLAST)

001: MNWSVRRDKK YRLAITSLLE QYPNRVEIVQ LDESNGEIRS DPNLAFEHPY PHTKTIFILD NGCQRPISSP PPATSSAYGE SPTIAPASSS SRASTATRKA
101: SYVDR

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.