Factsheet for PGSC0003DMT400025654

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082470.1.1	Tomato	nucleus	98.27	98.27
VIT_14s0068g00660.t01	Wine grape	cytosol	90.49	91.28
KRH06773	Soybean	nucleus	90.2	90.99
KRG94752	Soybean	cytosol	89.91	90.7
AT1G12910.1	Thale cress	cytosol	90.2	90.46
CDY16039	Canola	cytosol	88.76	89.02
CDY26600	Canola	cytosol	88.76	89.02
GSMUA_Achr10P...	Banana	cytosol	72.33	86.85
AT3G26640.1	Thale cress	cytosol	85.3	85.55
Bra026947.1-P	Field mustard	cytosol	89.05	80.89
GSMUA_Achr6P11830_001	Banana	cytosol	77.23	78.36
CDY39498	Canola	cytosol	23.05	67.8
TraesCS6A01G193300.1	Wheat	cytosol	77.52	64.82
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	77.52	64.66
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	76.95	64.65
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	76.37	64.48
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	76.95	64.18
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	76.95	64.18
PGSC0003DMT400068077	Potato	cytosol	58.21	59.06
CDY70646	Canola	nucleus	17.87	59.05
PGSC0003DMT400001513	Potato	nucleus	57.93	58.77
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	71.18	58.53
CDY65574	Canola	nucleus	17.29	57.14
PGSC0003DMT400094468	Potato	cytosol	53.03	53.64

Protein Annotations

EntrezGene:102598578	Gene3D:2.130.10.10	MapMan:27.1.5.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1ALT1	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400009907
PGSC:PGSC0003DMG400009907	EnsemblPlants:PGSC0003DMT400025654	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF9	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296F81A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006342135.1	:	:

Description

WD40 repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009907]

Coordinates

chr4:+:71637682..71639344

Molecular Weight (calculated)

39232.9 Da

IEP (calculated)

4.554

GRAVY (calculated)

-0.419

Length

347 amino acids

Sequence
(BLAST)

001: MGVSSDPNQQ DGSDEQQRRS EIYTYEAPWH IYAMNWSVRK DKKYRLAIAS LLEQYPNRVE IVQLDDSNGE IRSDPKLSFE HPYPPTKVIF IPDKECQKPD
101: LIATSSDYLR IWRVASDNSR VEIKSLLNNN RNSEFSGPLT SFDWNEAEPR RIGTSSIDTT CTIWDIERET VDTQLIAHDK EVYDIAWGGV GVFASVSADG
201: SVRVFDLRDK EHSTIIYESS EPDTPLVRLG WNKQDPRYMA TIIMDSAKVV VLDIRFPTLP VVELQRHQAS VNAIAWAPHS SCHICTAGDD SQALIWDLSS
301: MGQPIEGGLD PILAYTAGAE IEQLQWSSSQ PDWVAIAFSN KLQILRV

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.