Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 82.75 | 97.92 |
| Bra019798.1-P | Field mustard | extracellular | 15.79 | 80.6 |
| KRH06773 | Soybean | nucleus | 79.82 | 79.36 |
| KRG94752 | Soybean | cytosol | 79.24 | 78.78 |
| VIT_14s0068g00660.t01 | Wine grape | cytosol | 78.95 | 78.49 |
| AT1G12910.1 | Thale cress | cytosol | 78.95 | 78.03 |
| CDY16039 | Canola | cytosol | 78.36 | 77.46 |
| Solyc04g082470.1.1 | Tomato | nucleus | 78.36 | 77.23 |
| PGSC0003DMT400025654 | Potato | cytosol | 78.36 | 77.23 |
| CDY26600 | Canola | cytosol | 78.07 | 77.17 |
| CDX98027 | Canola | extracellular | 14.91 | 76.12 |
| AT3G26640.1 | Thale cress | cytosol | 75.15 | 74.28 |
| Bra026947.1-P | Field mustard | cytosol | 78.36 | 70.16 |
| VIT_03s0017g02150.t01 | Wine grape | cytosol | 19.88 | 70.1 |
| TraesCS6A01G193300.1 | Wheat | cytosol | 75.44 | 62.17 |
| EES06890 | Sorghum | cytoskeleton, cytosol, nucleus | 75.44 | 62.02 |
| OQU85036 | Sorghum | cytoskeleton, cytosol, nucleus | 75.44 | 62.02 |
| Os02t0524600-01 | Rice | cytoskeleton, cytosol, nucleus | 74.27 | 61.8 |
| TraesCS6B01G221400.3 | Wheat | cytoskeleton, cytosol, nucleus | 74.56 | 61.74 |
| Zm00001d016653_P001 | Maize | cytoskeleton, cytosol, nucleus | 74.85 | 61.54 |
| GSMUA_Achr4P29160_001 | Banana | cytosol | 52.63 | 56.78 |
| HORVU6Hr1G044360.6 | Barley | cytosol, nucleus, plastid | 67.25 | 54.5 |
| CDY39498 | Canola | cytosol | 18.71 | 54.24 |
| CDY65574 | Canola | nucleus | 16.08 | 52.38 |
| CDY70646 | Canola | nucleus | 16.08 | 52.38 |
| CDY70647 | Canola | cytosol | 19.59 | 50.76 |
| CDY65575 | Canola | cytosol | 19.3 | 50.0 |
| CDY19411 | Canola | extracellular, plastid | 12.87 | 48.89 |
| GSMUA_Achr5P10240_001 | Banana | nucleus | 19.59 | 27.46 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr6G11830_001 |
| EnsemblPlants:GSMUA_Achr6P11830_001 | EnsemblPlants:GSMUA_Achr6T11830_001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M0T681 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19919 | PANTHER:PTHR19919:SF9 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI000294EBD0 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
WD repeat-containing protein LWD1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G11830_001]
Coordinates
chr6:-:7832377..7833848
Molecular Weight (calculated)
37556.0 Da
IEP (calculated)
4.682
GRAVY (calculated)
-0.308
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGTGGGVGV GDRGGTPDRG SSEADGEEEQ QKQQRSEIYT YEAPWHIYAM NWSVRRDKKY RLAIGSLLEG YGNRVEIVQL DEATGEIRSD PALSFEHPYP
101: PTKAMFVPDR DCLRPDLLAT SADFLRIWRP RRIGTSSIDT TCTVWDIDRE AVDTQLIAHD KEVYDIAWGG VGVFASVSAD GSVRVFDLRD KEHSTIIYES
201: ADPPGTPLVR LGWNKQDPRY MATIIMDSAK VVVLDIRFPT LPVVELHRHQ ASVNAIAWAP HSSCHICTAG DDSQALIWDL SSMGSDQASG HQPVASAATA
301: EGGLDPILAY TAGAEIEQLQ WSSSQPDWVA IAFSTKLQIL RV
101: PTKAMFVPDR DCLRPDLLAT SADFLRIWRP RRIGTSSIDT TCTVWDIDRE AVDTQLIAHD KEVYDIAWGG VGVFASVSAD GSVRVFDLRD KEHSTIIYES
201: ADPPGTPLVR LGWNKQDPRY MATIIMDSAK VVVLDIRFPT LPVVELHRHQ ASVNAIAWAP HSSCHICTAG DDSQALIWDL SSMGSDQASG HQPVASAATA
301: EGGLDPILAY TAGAEIEQLQ WSSSQPDWVA IAFSTKLQIL RV
001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
Arabidopsis Description
LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.