Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G12910.1 | Thale cress | cytosol | 91.04 | 91.04 |
| CDY16039 | Canola | cytosol | 91.04 | 91.04 |
| CDY26600 | Canola | cytosol | 90.75 | 90.75 |
| KRH06773 | Soybean | nucleus | 86.13 | 86.63 |
| VIT_14s0068g00660.t01 | Wine grape | cytosol | 85.84 | 86.34 |
| KRG94752 | Soybean | cytosol | 85.84 | 86.34 |
| PGSC0003DMT400025654 | Potato | cytosol | 85.55 | 85.3 |
| Solyc04g082470.1.1 | Tomato | nucleus | 84.97 | 84.73 |
| GSMUA_Achr10P... | Banana | cytosol | 69.65 | 83.39 |
| Bra026947.1-P | Field mustard | cytosol | 91.04 | 82.46 |
| GSMUA_Achr6P11830_001 | Banana | cytosol | 74.28 | 75.15 |
| CDY39498 | Canola | cytosol | 25.14 | 73.73 |
| CDY70646 | Canola | nucleus | 19.08 | 62.86 |
| TraesCS6A01G193300.1 | Wheat | cytosol | 74.28 | 61.93 |
| Os02t0524600-01 | Rice | cytoskeleton, cytosol, nucleus | 73.41 | 61.8 |
| EES06890 | Sorghum | cytoskeleton, cytosol, nucleus | 74.28 | 61.78 |
| Zm00001d016653_P001 | Maize | cytoskeleton, cytosol, nucleus | 74.28 | 61.78 |
| OQU85036 | Sorghum | cytoskeleton, cytosol, nucleus | 74.28 | 61.78 |
| TraesCS6B01G221400.3 | Wheat | cytoskeleton, cytosol, nucleus | 73.7 | 61.74 |
| CDY65574 | Canola | nucleus | 18.5 | 60.95 |
| AT5G24520.1 | Thale cress | cytosol | 56.36 | 57.18 |
| HORVU6Hr1G044360.6 | Barley | cytosol, nucleus, plastid | 67.92 | 55.69 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:27.1.5.1 | EntrezGene:822276 | UniProt:A0A178V7P7 | ProteinID:AEE77190.1 | ArrayExpress:AT3G26640 |
| EnsemblPlantsGene:AT3G26640 | RefSeq:AT3G26640 | TAIR:AT3G26640 | RefSeq:AT3G26640-TAIR-G | EnsemblPlants:AT3G26640.1 | TAIR:AT3G26640.1 |
| EMBL:AY086141 | ProteinID:BAB01729.1 | EMBL:BT004214 | EMBL:BT020361 | ProteinID:CAA66815.1 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0043153 | GO:GO:0048511 | GO:GO:0048573 | GO:GO:0050896 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | Symbol:LWD2 | RefSeq:NP_189298.1 | ProteinID:OAP01896.1 | PFAM:PF00400 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19919 | PANTHER:PTHR19919:SF9 | UniProt:Q38960 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00000A503A | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | EMBL:X97488 | : | : | : | : |
Description
LWD2LWD2 [Source:UniProtKB/TrEMBL;Acc:A0A178V7P7]
Coordinates
chr3:+:9793179..9794874
Molecular Weight (calculated)
39093.6 Da
IEP (calculated)
4.485
GRAVY (calculated)
-0.396
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTSSDQIQN GSEEQSKRSE IYTYEAPWQI YAMNWSIRRD KKYRLAITSL IEQYPNRVEI VQLDESNGEI RSDPNLCFEH PYPPTKTSFI PDKECQRPDL
101: LATSSDFLRL WRISDDESRV ELKSCLSSDK NSEFSGPITS FDWNEAEPRR IGTSSIDTTC TIWDIEREVV DTQLIAHDKE VYDIAWGGVG VFASVSEDGS
201: VRVFDLRDKE HSTIIYESGE PSTPLVRLSW NKQDPRYMAT VIMGSAKIVV LDIRFPALPV VELQRHQASV NAIAWAPHSS SHICSAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEV EQLQWSSSQP DWVAIAFSNK LQILRV
101: LATSSDFLRL WRISDDESRV ELKSCLSSDK NSEFSGPITS FDWNEAEPRR IGTSSIDTTC TIWDIEREVV DTQLIAHDKE VYDIAWGGVG VFASVSEDGS
201: VRVFDLRDKE HSTIIYESGE PSTPLVRLSW NKQDPRYMAT VIMGSAKIVV LDIRFPALPV VELQRHQASV NAIAWAPHSS SHICSAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEV EQLQWSSSQP DWVAIAFSNK LQILRV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.