Factsheet for TraesCS6B01G221400.3

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
cytoskeleton 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G193300.1	Wheat	cytosol	92.01	91.57
GSMUA_Achr10P...	Banana	cytosol	57.87	82.7
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	82.57	80.81
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	79.18	79.56
VIT_14s0068g00660.t01	Wine grape	cytosol	65.38	78.49
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	78.69	78.12
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	78.69	78.12
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	78.69	78.12
KRG94752	Soybean	cytosol	64.89	77.91
KRH06773	Soybean	nucleus	64.65	77.62
Solyc04g082470.1.1	Tomato	nucleus	64.65	76.95
PGSC0003DMT400025654	Potato	cytosol	64.65	76.95
AT1G12910.1	Thale cress	cytosol	64.41	76.88
CDY16039	Canola	cytosol	63.44	75.72
CDY26600	Canola	cytosol	63.2	75.43
GSMUA_Achr6P11830_001	Banana	cytosol	61.74	74.56
AT3G26640.1	Thale cress	cytosol	61.74	73.7
Bra019798.1-P	Field mustard	extracellular	11.38	70.15
Bra026947.1-P	Field mustard	cytosol	63.68	68.85
CDX98027	Canola	extracellular	11.14	68.66
VIT_03s0017g02150.t01	Wine grape	cytosol	14.29	60.82
TraesCS6B01G286700.1	Wheat	cytosol	45.04	52.25
CDY39498	Canola	cytosol	14.77	51.69
CDY70646	Canola	nucleus	11.86	46.67
CDY65574	Canola	nucleus	11.86	46.67
CDY70647	Canola	cytosol	14.53	45.45
CDY65575	Canola	cytosol	14.29	44.7
CDY19411	Canola	extracellular, plastid	9.69	44.44

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19919	PANTHER:PTHR19919:SF9	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS6B01G221400	EnsemblPlants:TraesCS6B01G221400.3
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr6B:+:317880349..317881590

Molecular Weight (calculated)

43852.0 Da

IEP (calculated)

4.491

GRAVY (calculated)

-0.278

Length

413 amino acids

Sequence
(BLAST)

001: MGGGGAAGDG DGWADQDQGN GGSRGGGEAK RSEIYTYEAG WHIYGMNWSV RRDKKYRLAI ASLLEQLVNR VEVVQLDEST GDIAPVLSFD HPFPPTKSMF
101: VPDPQGLRPD LLATSADLLR IWRITDDDAA APGAADSNNG SVRCNGVGGP AGQQPGVKLC CELNGNRNSD FCGPLTSFDW NDADPRRIGT SSIDTTCTIW
201: DVEREVVDTQ LIAHDKEVYD IAWGGAGVFA SVSADGSVRV FDLRDKEHST IIYESSSGGG SNSAATDGGA VSPTPLVRLG WNKQDPRYMA TIIMDSPKVV
301: VLDIRYPTLP VVELHRHHAP VNAMAWAPHS SCHICTAGDD SQALIWDLSS MGTGNNSGGN GNGNAAAAAA AEGGLDPILA YTAGAEVEQL QWSATQPDWV
401: AIVFANKLQI LRV

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.