Factsheet for HORVU6Hr1G044360.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G193300.1	Wheat	cytosol	84.36	85.78
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	80.81	82.57
GSMUA_Achr10P...	Banana	cytosol	50.95	74.39
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	72.04	73.97
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	72.27	73.32
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	72.27	73.32
VIT_14s0068g00660.t01	Wine grape	cytosol	59.72	73.26
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	71.33	72.36
KRH06773	Soybean	nucleus	58.53	71.8
KRG94752	Soybean	cytosol	58.29	71.51
AT1G12910.1	Thale cress	cytosol	58.53	71.39
Solyc04g082470.1.1	Tomato	nucleus	58.53	71.18
PGSC0003DMT400025654	Potato	cytosol	58.53	71.18
CDY26600	Canola	cytosol	57.82	70.52
CDY16039	Canola	cytosol	57.82	70.52
Bra019798.1-P	Field mustard	extracellular	11.14	70.15
CDX98027	Canola	extracellular	10.9	68.66
AT3G26640.1	Thale cress	cytosol	55.69	67.92
GSMUA_Achr6P11830_001	Banana	cytosol	54.5	67.25
Bra026947.1-P	Field mustard	cytosol	58.77	64.92
VIT_03s0017g02150.t01	Wine grape	cytosol	14.22	61.86
CDY70647	Canola	cytosol	14.46	46.21
CDY65575	Canola	cytosol	14.22	45.45
CDY19411	Canola	extracellular, plastid	9.48	44.44
HORVU0Hr1G016450.1	Barley	cytosol	39.34	44.03
CDY65574	Canola	nucleus	8.77	35.24
CDY70646	Canola	nucleus	8.53	34.29
CDY39498	Canola	cytosol	9.48	33.9

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287U252	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU6Hr1G044360	EnsemblPlants:HORVU6Hr1G044360.6	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF9	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000B46541A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:254323769..254325817

Molecular Weight (calculated)

44958.2 Da

IEP (calculated)

4.771

GRAVY (calculated)

-0.349

Length

422 amino acids

Sequence
(BLAST)

001: RTSSPHTTLP FPRNIKEPPN QTPPTTPHTP HLIRSLEESC SGVMGGGGAA ADGDGWADQD QGNGGSRGGG EAKRSEIYTY EAGWHIYGMN WSVRRDKKYR
101: LAIASLLEQL VNRVEVVQLD ESTDLLRIWR ITDDDAAAPG AADSNNGSVR CNGVGGPAGQ QPGVKLCCEL NGNRNSDFCG PLTSFDWNDA DPRRIGTSSI
201: DTTCTIWDVE REVVDTQLIA HDKEVYDIAW GGAGVFASVS ADGSVRVFDL RDKEHSTIIY ESSSGGGSNS AVTDGGSVSP TPLVRLGWNK QDPRYMATII
301: MDSPKVVVLD IRYPTLPVVE LHRHHAPVNA IAWAPHSSCH ICTAGDDSQA LIWDLSSMGT GNNSGGNGNG NAAAAAAAAA EGGLDPILAY TAGAEVEQLQ
401: WSATQPDWVA IVFANKLQIL RV

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.