Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16039 | Canola | cytosol | 97.98 | 97.98 |
| CDY26600 | Canola | cytosol | 97.98 | 97.98 |
| VIT_14s0068g00660.t01 | Wine grape | cytosol | 93.06 | 93.6 |
| KRH06773 | Soybean | nucleus | 92.49 | 93.02 |
| KRG94752 | Soybean | cytosol | 92.2 | 92.73 |
| AT3G26640.1 | Thale cress | cytosol | 91.04 | 91.04 |
| PGSC0003DMT400025654 | Potato | cytosol | 90.46 | 90.2 |
| Solyc04g082470.1.1 | Tomato | nucleus | 89.6 | 89.34 |
| Bra026947.1-P | Field mustard | cytosol | 98.27 | 89.01 |
| GSMUA_Achr10P... | Banana | cytosol | 72.83 | 87.2 |
| CDY39498 | Canola | cytosol | 27.17 | 79.66 |
| GSMUA_Achr6P11830_001 | Banana | cytosol | 78.03 | 78.95 |
| Os02t0524600-01 | Rice | cytoskeleton, cytosol, nucleus | 77.75 | 65.45 |
| EES06890 | Sorghum | cytoskeleton, cytosol, nucleus | 78.32 | 65.14 |
| OQU85036 | Sorghum | cytoskeleton, cytosol, nucleus | 78.32 | 65.14 |
| Zm00001d016653_P001 | Maize | cytoskeleton, cytosol, nucleus | 78.03 | 64.9 |
| TraesCS6A01G193300.1 | Wheat | cytosol | 77.75 | 64.82 |
| TraesCS6B01G221400.3 | Wheat | cytoskeleton, cytosol, nucleus | 76.88 | 64.41 |
| CDY70646 | Canola | nucleus | 19.08 | 62.86 |
| CDY65574 | Canola | nucleus | 18.5 | 60.95 |
| AT5G24520.1 | Thale cress | cytosol | 58.67 | 59.53 |
| HORVU6Hr1G044360.6 | Barley | cytosol, nucleus, plastid | 71.39 | 58.53 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:27.1.5.1 | EntrezGene:837849 | UniProt:A0A178W0A8 | ProteinID:AAF78495.1 | ProteinID:AEE28948.1 |
| ArrayExpress:AT1G12910 | EnsemblPlantsGene:AT1G12910 | RefSeq:AT1G12910 | TAIR:AT1G12910 | RefSeq:AT1G12910-TAIR-G | EnsemblPlants:AT1G12910.1 |
| TAIR:AT1G12910.1 | Symbol:ATAN11 | EMBL:AY087676 | EMBL:AY093101 | EMBL:AY128776 | Unigene:At.62609 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009718 | GO:GO:0009791 |
| GO:GO:0043153 | GO:GO:0044212 | GO:GO:0048511 | GO:GO:0048573 | GO:GO:0050896 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_172751.1 | ProteinID:OAP11989.1 | PFAM:PF00400 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19919 |
| PANTHER:PTHR19919:SF9 | UniProt:Q9LPV9 | SMART:SM00320 | SUPFAM:SSF50978 | EMBL:U94746 | UniParc:UPI00000AA655 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : |
Description
LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
Coordinates
chr1:-:4394897..4396291
Molecular Weight (calculated)
39090.7 Da
IEP (calculated)
4.566
GRAVY (calculated)
-0.392
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.