Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, cytoskeleton
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85036 | Sorghum | cytoskeleton, cytosol, nucleus | 86.37 | 85.34 |
| EES06890 | Sorghum | cytoskeleton, cytosol, nucleus | 86.37 | 85.34 |
| Zm00001d016653_P001 | Maize | cytoskeleton, cytosol, nucleus | 86.13 | 85.1 |
| GSMUA_Achr10P... | Banana | cytosol | 58.39 | 83.05 |
| TraesCS6A01G193300.1 | Wheat | cytosol | 80.29 | 79.52 |
| TraesCS6B01G221400.3 | Wheat | cytoskeleton, cytosol, nucleus | 79.56 | 79.18 |
| KRH06773 | Soybean | nucleus | 65.69 | 78.49 |
| VIT_14s0068g00660.t01 | Wine grape | cytosol | 65.45 | 78.2 |
| KRG94752 | Soybean | cytosol | 65.45 | 78.2 |
| AT1G12910.1 | Thale cress | cytosol | 65.45 | 77.75 |
| CDY16039 | Canola | cytosol | 64.72 | 76.88 |
| CDY26600 | Canola | cytosol | 64.48 | 76.59 |
| PGSC0003DMT400025654 | Potato | cytosol | 64.48 | 76.37 |
| Solyc04g082470.1.1 | Tomato | nucleus | 63.99 | 75.79 |
| Bra019798.1-P | Field mustard | extracellular | 12.17 | 74.63 |
| GSMUA_Achr6P11830_001 | Banana | cytosol | 61.8 | 74.27 |
| AT3G26640.1 | Thale cress | cytosol | 61.8 | 73.41 |
| HORVU6Hr1G044360.6 | Barley | cytosol, nucleus, plastid | 73.97 | 72.04 |
| CDX98027 | Canola | extracellular | 11.68 | 71.64 |
| Bra026947.1-P | Field mustard | cytosol | 65.45 | 70.42 |
| VIT_03s0017g02150.t01 | Wine grape | cytosol | 14.6 | 61.86 |
| CDY39498 | Canola | cytosol | 15.09 | 52.54 |
| Os02t0682500-01 | Rice | cytosol | 44.28 | 51.27 |
| CDY70647 | Canola | cytosol | 14.84 | 46.21 |
| CDY70646 | Canola | nucleus | 11.68 | 45.71 |
| CDY65574 | Canola | nucleus | 11.68 | 45.71 |
| CDY65575 | Canola | cytosol | 14.6 | 45.45 |
| CDY19411 | Canola | extracellular, plastid | 9.49 | 43.33 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:4329512 | EMBL:AK243061 | ProteinID:BAD25387.1 | ProteinID:BAS78975.1 |
| ProteinID:EAZ23267.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlantsGene:Os02g0524600 |
| EnsemblPlants:Os02t0524600-01 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19919 |
| PANTHER:PTHR19919:SF9 | UniProt:Q6H7B2 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00003B4454 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_015627230.1 | RefSeq:XP_015627231.1 |
| SEG:seg | : | : | : | : | : |
Description
TRANSPARENT TESTA GLABRA1B, TRANSPARENT TESTA GLABRA 1BWD40 repeat protein. (Os02t0524600-01)
Coordinates
chr2:-:19178240..19179938
Molecular Weight (calculated)
43653.4 Da
IEP (calculated)
4.704
GRAVY (calculated)
-0.351
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGAGGDG EAWADQEQGN GGGRGGGGGE AKRSEIYTYE AGWHIYGMNW SVRRDKKYRL AIASLLEQHN NHVQVVQLDE SSGDIAPVLT FDHPYPPTKT
101: MFVPDPHSVR PDLLATSADH LRIWRIPSPD EAAAAAAASS NSGSVRCNGT ASPDVELRCE LNGNRNSDYC GPLTSFDWND ADPRRIGTSS IDTTCTIWDV
201: EREAVDTQLI AHDKEVYDIA WGGAGVFASV SADGSVRVFD LRDKEHSTII YESGSGGSSN SAGADGGAAS PTPLVRLGWN KQDPRYMATI IMDSPKVVVL
301: DIRYPTLPVV ELHRHHSPVN AIAWAPHSSC HICTAGDDSQ ALIWDLSSMG TGSNNGGNGN GNAAAAAAAE GGLDPILAYT AGAEIEQLQW SATQPDWVAI
401: AFSTKLQILR V
101: MFVPDPHSVR PDLLATSADH LRIWRIPSPD EAAAAAAASS NSGSVRCNGT ASPDVELRCE LNGNRNSDYC GPLTSFDWND ADPRRIGTSS IDTTCTIWDV
201: EREAVDTQLI AHDKEVYDIA WGGAGVFASV SADGSVRVFD LRDKEHSTII YESGSGGSSN SAGADGGAAS PTPLVRLGWN KQDPRYMATI IMDSPKVVVL
301: DIRYPTLPVV ELHRHHSPVN AIAWAPHSSC HICTAGDDSQ ALIWDLSSMG TGSNNGGNGN GNAAAAAAAE GGLDPILAYT AGAEIEQLQW SATQPDWVAI
401: AFSTKLQILR V
001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
Arabidopsis Description
LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.